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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO59467 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 221aa MW: 24373.7 Da PI: 7.4361 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.3 | 5.5e-15 | 19 | 64 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ie + + +tfskRr gi KKA EL +LC+++ +++fs+ gk + OMO59467 19 LIEKEEDKLITFSKRRSGIYKKACELNTLCGTDTGILVFSPAGKPF 64 588889999*********************************9855 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MNAGLVKKTK GRQKIEMKLI EKEEDKLITF SKRRSGIYKK ACELNTLCGT DTGILVFSPA 60 GKPFSFGHPS FESLANRFLN QSPPPNNNTH PLVEARRKAK VEQLAMQYNE VSDQLDAEKY 120 RGKMIDEMTK GNETQGWWKA PVDQLSEQQE LLDLYSNYEN VLGIMLSKMN VKGAGDGGIF 180 SSTVASMDPA DQHTDVFATN PNVGVLPATF PPGLGPAGCQ F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-36 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO59467 |