PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO59327

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 1360aa MW: 153792 Da PI: 5.7874

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO59327	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	94.4	1.8e-29	402	541	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksgyWka 85 p+G++F+P+d ++ e+L++k+ + l + +++e +i++++P++Lp ++ + +++yfF ++ ++yatg+rk+r+ ++ +W++ OMO59327 402 PVGVKFDPSDAAIL-EHLAAKCGVGNskehafL---DvfipTLEENhGICYTHPENLP-GARMDGSSIYFFDRTMNAYATGQRKRRKiqhnsnEEHVRWHK 497 89********999.99999877773443332...343332444447********.44457799***************845554444889* PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tgk+k++++ +g ++g kk++v+y ++r++k+ekt+Wvmh+y+l OMO59327 498 TGKSKSIIE-NGVHKGWKKIMVLYkcSKRNSKPEKTNWVMHQYHL 541 *******.999*******5557889999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1360 aa Download sequence
MGSGNGFFST EEFNLDAKWL IEPQQLFVGP KIGEGAHAKV YEGKYKNQTV AIKVVRRGET 60 PEEIARREGR FAREVAMLSR VQHKNLVKFI GACKEPVMVI VTELLLGGTL RKYLLNLRPK 120 SLDMRVAIGF ALDIARAMEC LHSHGIIHRD LKPENLILTE DHKTVKLADF GLAREESLTE 180 MMTAETGTYR WMAPELYSTV TLRHGEKKHY NHKVDAYSFA IVLWELIHNK LPFEGMSNLQ 240 AAYAAAFKNV RPSADDLPED LAAIVTSCWQ EDPNARPNFT QIIQMLLHSL SSISPPEPVM 300 PPKRTISENA VLPPESPGVA VMENINVNKV HPNAFAPFSF SSLKLARMTW LVDCRALAKK 360 IKNASSSSSS TPNIDYGACR ECPNCGYRID NSDVSPPWPG FPVGVKFDPS DAAILEHLAA 420 KCGVGNSKEH AFLDVFIPTL EENHGICYTH PENLPGARMD GSSIYFFDRT MNAYATGQRK 480 RRKIQHNSNE EHVRWHKTGK SKSIIENGVH KGWKKIMVLY KCSKRNSKPE KTNWVMHQYH 540 LGAYEEEQDG DYVVSKITYQ LQKQADKNDG SPLIEEPENL TLQTTPRTPK TTPPNPPRPC 600 KSMTDDDESM HQEAEDSAEA SLALPHAVDD SNWLAGESQA AENPSLDCLD YSLLCNDIIH 660 ISPPQKNEYN GCVDIKNEVT FNNDASYGIP ELENLDFDTP PDFQIADLQF GSQDSMRSWM 720 DRNVGSFKDA TPTLVSTNLI QLDACFEDNV GSLPSLANPF NGWCRMMSTS RGRSMRSKVE 780 RRMQKESGKT AREIRRAKKI KKKLMTDEER LIYNLKRAKK KVALLLQKLK KYELPELPPS 840 VHDPELFTLE QLQAYKKIGF RNKNYVPVGV RGVFGGVVQN MHLHWKFHET VQVCCDNFPK 900 EKIKEMATML ARLSGGIVIN IHNVKTIIMF RGRNYRQPKN LIPINTLTKR KALFKARFEQ 960 ALEAQKLNIK KIEQELRRKG INPEDPVAMA SIQRVASTFF NAIDEKEGSP YVFRGDQSSV 1020 AEPRKTSAEA EAPAESDEEE LDKFIAEIED AADREWAEGE EQEKEEIGRI RYFNRQEFGG 1080 RTGRLDDFRN NYSYHEVRGS RGWKDMRGSK RTADSEDEYE DDIVRGAELD SPYAGGLSES 1140 EDDDDSEEAF EFKRSRVENR KQDKIGRWNN SNNSLGFRQN AGGKDIHGSK RTADSEDEYE 1200 DDDIVGGAEL DFHNAGGLSE TGSDNDNDDS EEAFEFKSSR VENRKQDKAG RWNNTVGFRR 1260 SAGGSNKQKK AEEDSDVEDL LSDLDNAMRE SDAEEEYDFR GHSIASENFR SSSDEEDGFY 1320 STKGSEKNKS HCYESDDSYD IPKDGLSRNT TKKAEDVFSD

Sequence ? help Back to Top

Protein Sequence Length: 1360 aa Download sequence

MGSGNGFFST EEFNLDAKWL IEPQQLFVGP KIGEGAHAKV YEGKYKNQTV AIKVVRRGET  60
PEEIARREGR FAREVAMLSR VQHKNLVKFI GACKEPVMVI VTELLLGGTL RKYLLNLRPK  120
SLDMRVAIGF ALDIARAMEC LHSHGIIHRD LKPENLILTE DHKTVKLADF GLAREESLTE  180
MMTAETGTYR WMAPELYSTV TLRHGEKKHY NHKVDAYSFA IVLWELIHNK LPFEGMSNLQ  240
AAYAAAFKNV RPSADDLPED LAAIVTSCWQ EDPNARPNFT QIIQMLLHSL SSISPPEPVM  300
PPKRTISENA VLPPESPGVA VMENINVNKV HPNAFAPFSF SSLKLARMTW LVDCRALAKK  360
IKNASSSSSS TPNIDYGACR ECPNCGYRID NSDVSPPWPG FPVGVKFDPS DAAILEHLAA  420
KCGVGNSKEH AFLDVFIPTL EENHGICYTH PENLPGARMD GSSIYFFDRT MNAYATGQRK  480
RRKIQHNSNE EHVRWHKTGK SKSIIENGVH KGWKKIMVLY KCSKRNSKPE KTNWVMHQYH  540
LGAYEEEQDG DYVVSKITYQ LQKQADKNDG SPLIEEPENL TLQTTPRTPK TTPPNPPRPC  600
KSMTDDDESM HQEAEDSAEA SLALPHAVDD SNWLAGESQA AENPSLDCLD YSLLCNDIIH  660
ISPPQKNEYN GCVDIKNEVT FNNDASYGIP ELENLDFDTP PDFQIADLQF GSQDSMRSWM  720
DRNVGSFKDA TPTLVSTNLI QLDACFEDNV GSLPSLANPF NGWCRMMSTS RGRSMRSKVE  780
RRMQKESGKT AREIRRAKKI KKKLMTDEER LIYNLKRAKK KVALLLQKLK KYELPELPPS  840
VHDPELFTLE QLQAYKKIGF RNKNYVPVGV RGVFGGVVQN MHLHWKFHET VQVCCDNFPK  900
EKIKEMATML ARLSGGIVIN IHNVKTIIMF RGRNYRQPKN LIPINTLTKR KALFKARFEQ  960
ALEAQKLNIK KIEQELRRKG INPEDPVAMA SIQRVASTFF NAIDEKEGSP YVFRGDQSSV  1020
AEPRKTSAEA EAPAESDEEE LDKFIAEIED AADREWAEGE EQEKEEIGRI RYFNRQEFGG  1080
RTGRLDDFRN NYSYHEVRGS RGWKDMRGSK RTADSEDEYE DDIVRGAELD SPYAGGLSES  1140
EDDDDSEEAF EFKRSRVENR KQDKIGRWNN SNNSLGFRQN AGGKDIHGSK RTADSEDEYE  1200
DDDIVGGAEL DFHNAGGLSE TGSDNDNDDS EEAFEFKSSR VENRKQDKAG RWNNTVGFRR  1260
SAGGSNKQKK AEEDSDVEDL LSDLDNAMRE SDAEEEYDFR GHSIASENFR SSSDEEDGFY  1320
STKGSEKNKS HCYESDDSYD IPKDGLSRNT TKKAEDVFSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01600.1	8e-79	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO59327