PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Link Out |

Basic Information? help Back to Top

TF ID

OMO59265

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 173aa MW: 18653.7 Da PI: 7.8027

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO59265	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.2	1.8e-45	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++p+++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l+ el+++++ OMO59265 10 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVPPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVMRLQRELDATNA 108 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MASSSYSNSP CAACKFLRRK CMPDCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVPP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVMRLQ RELDATNADL IRYACNEMPP 120 AASGQYGRRS GHGSGGGGGG AGSYNQNSSG FYYPSHQWNS NNGDNESSGG GSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-71	LBD family protein

Link Out ? help Back to Top
Ensembl	OMO59265