PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO58927
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 267aa    MW: 30510.5 Da    PI: 9.886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO58927genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-061571961155
               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               rR +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  OMO58927 157 RRTQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 196
               8*****************99.....9****************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MRNALLTPVS SQLFNIGNNE VQQMPYLDVL LQMESKGIFN NDNQLRDGAF AIPYQSHFNS  60
DNLQDYHQSG SSNYDNNFQQ SISLSSKIAL PQFEPINIQN LQNGRKRRPV EANDQMPFHG  120
TKNKRKKVSS FEQQQQPYSI PEAVTDFNEC RLHMPVRRTQ KLSDKITALQ KLVSPYGKTD  180
TASVLQEASL YIKLLQEQIQ NLFKMLSSSY SSLRAIHPQQ EIGKKQQDLR SKGLCLVPIS  240
FTQKVTKDDQ IDSNNSISRR TIIPGKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105127RKRRPVEANDQMPFHGTKNKRKK
2106128RKRRPVEANDQMPFHGTKNKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.12e-22bHLH family protein