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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO58788 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | MYB | ||||||||
| Protein Properties | Length: 332aa MW: 36741.8 Da PI: 5.4074 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +l+ +v+++G g+W+ +++ g+ R++k+c++rw +yl
OMO58788 15 KGAWTAEEDRKLIAYVQEHGEGSWRNVPEGAGLQRCGKSCRLRWANYL 62
79********************************************97 PP
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| 2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg +T +E+e ++++ ++lG++ W++Ia++++ +Rt++++k++w+ +
OMO58788 68 RGDFTSDEEETIIQLQAKLGNR-WSAIAKHLP-RRTDNEIKNFWNAH 112
899*******************.*********.***********976 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 332 aa Download sequence |
MGKTTFCGSG NGLKKGAWTA EEDRKLIAYV QEHGEGSWRN VPEGAGLQRC GKSCRLRWAN 60 YLRPGIRRGD FTSDEEETII QLQAKLGNRW SAIAKHLPRR TDNEIKNFWN AHLKKRLATM 120 TDHHDPLPSP SSNENSNIAN PPIAHTESVS ATQESDQQPK TMSSRPTSAS ALLLNKLASK 180 VTTLQCVDGL RLRACPSSRN MQSMSSSSTS DIWPDDVLSS ERSIEYNAAE SNMEYPLSDS 240 HVFSNILPAE ITINTESESS DVRGFSNTWA PSLSNMGSKL FAWFNYMDGL DDCNDNLPLH 300 GPDQFGDGEV WGWGLDEFGM IYGSISINCT VT |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G01140.1 | 2e-58 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO58788 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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