PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO58737

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 1002aa MW: 108329 Da PI: 6.6773

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO58737	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.9	1.2e-29	255	314	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+ OMO58737 255 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGSpTCPVRKQVQRCAEDMSILITTYEGNHNHP 314 58************************888**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1002 aa Download sequence
MSNNLEKSAN GLFEEKKMTK SGSSASGDHA SVEMINNKGE NQRHIKQEEE SSKPPSPSKK 60 QEDQIESTKA KMGEVKEENE RLKVLLSQMV KDYQSLQMRF LDILQQEEAK KSNTETPSHD 120 HHQENEEESD HFVSLSLGRT SSTASRQEAK KEEKKMSASN NNEGGLALAL ECKLELPVAS 180 TTEPAAAAAE KNLSSESSFG KEEEEEEPTE IWPPSKILKT DKNGDNNNNN EDASEQMQVK 240 KARVSVRARC DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTGSPTCPVR KQVQRCAEDM 300 SILITTYEGN HNHPLPLSAT AMASTTSAAA SMLQSQSSTS QPGLGTSVSA PATSSNHHGL 360 NFNFSGQTSS SRQPYQYYFP NSTISTSNSH PTITLDLTAP ANSSYFNRLS NAPRYSSSSS 420 TSLNFSSNSS SFSLEGPWNS AAGNLNFGAF PNKNSFIGAL NLAGRQPIST QQQHLYQSFT 480 QVNNNQTTPP DLSETITAAT KVITSNPNFR SALAAALTSF IGNNGGGQLP RDINHDQKQQ 540 KQGSLLLFPT SKSSSSGMAQ AQTSKESSSL SSCEAYFEKI KSRKKLPQPL QETLTAAFAR 600 IPVSSFPQVS GGKVIEIQAD TTIAEAVKIL SECNIMSAPV RNPDAVTSLD WRERYLGIID 660 YSAIILWVLE SAELAAVALS ASTATAAGLG AGAVGALGAL AMGVTGPAAV AGLTVAAVGA 720 AVVGGVAADQ VVKDAPSAAD NLGKDFYKVI FQEEPFKSTT VRSIVKSYRW APFIPVAKDS 780 SMLSVLLLLS KYRLRNVPVI EAGQPDIKNY ITQSAVVAGL EGCRGRDWFD CISSRPLSDL 840 GLPFIPADEV ISIGSDDLVL EAFKRMRDNQ VGGLPVVEGS GKKIVGNISI RDIRHLLLKP 900 ELFSNFRFRQ LTVKDFMNTV VSTGQECGRL TPPITCKVDS TLGSVIQSLA SKMVHRIYVV 960 AENGDEVIGV ITLRDVISCF IFEPPNYVDS YIGFSVKEML DQ

Sequence ? help Back to Top

Protein Sequence Length: 1002 aa Download sequence

MSNNLEKSAN GLFEEKKMTK SGSSASGDHA SVEMINNKGE NQRHIKQEEE SSKPPSPSKK  60
QEDQIESTKA KMGEVKEENE RLKVLLSQMV KDYQSLQMRF LDILQQEEAK KSNTETPSHD  120
HHQENEEESD HFVSLSLGRT SSTASRQEAK KEEKKMSASN NNEGGLALAL ECKLELPVAS  180
TTEPAAAAAE KNLSSESSFG KEEEEEEPTE IWPPSKILKT DKNGDNNNNN EDASEQMQVK  240
KARVSVRARC DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTGSPTCPVR KQVQRCAEDM  300
SILITTYEGN HNHPLPLSAT AMASTTSAAA SMLQSQSSTS QPGLGTSVSA PATSSNHHGL  360
NFNFSGQTSS SRQPYQYYFP NSTISTSNSH PTITLDLTAP ANSSYFNRLS NAPRYSSSSS  420
TSLNFSSNSS SFSLEGPWNS AAGNLNFGAF PNKNSFIGAL NLAGRQPIST QQQHLYQSFT  480
QVNNNQTTPP DLSETITAAT KVITSNPNFR SALAAALTSF IGNNGGGQLP RDINHDQKQQ  540
KQGSLLLFPT SKSSSSGMAQ AQTSKESSSL SSCEAYFEKI KSRKKLPQPL QETLTAAFAR  600
IPVSSFPQVS GGKVIEIQAD TTIAEAVKIL SECNIMSAPV RNPDAVTSLD WRERYLGIID  660
YSAIILWVLE SAELAAVALS ASTATAAGLG AGAVGALGAL AMGVTGPAAV AGLTVAAVGA  720
AVVGGVAADQ VVKDAPSAAD NLGKDFYKVI FQEEPFKSTT VRSIVKSYRW APFIPVAKDS  780
SMLSVLLLLS KYRLRNVPVI EAGQPDIKNY ITQSAVVAGL EGCRGRDWFD CISSRPLSDL  840
GLPFIPADEV ISIGSDDLVL EAFKRMRDNQ VGGLPVVEGS GKKIVGNISI RDIRHLLLKP  900
ELFSNFRFRQ LTVKDFMNTV VSTGQECGRL TPPITCKVDS TLGSVIQSLA SKMVHRIYVV  960
AENGDEVIGV ITLRDVISCF IFEPPNYVDS YIGFSVKEML DQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-51	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO58737