PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO58713
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Whirly
Protein Properties Length: 291aa    MW: 32070.3 Da    PI: 8.9497
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO58713genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly217.61.2e-67912291139
    Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101
               s++k+kaal+v+++ p+f  ldsg++kl+r+G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l+++esceffhdp++++s+eGkvrk+lkvePlpd
  OMO58713  91 SIFKGKAALTVEPRPPEFLPLDSGAFKLSREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTLISLGPRESCEFFHDPFKGKSEEGKVRKVLKVEPLPD 191
               79*************************************************************************************************** PP

    Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
               GsG+f+nl v+n+l++ +es+++Pv++aefavl+s+++
  OMO58713 192 GSGHFFNLGVQNKLINMDESIYIPVTRAEFAVLNSAFN 229
               **********************************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MLQLQFSSSP PLSAQTLNSN SNLCPSLSSL KFTQTHAFKF NPLSLTPKPS KFSIKCRQSD  60
YFDQQQRSNN SSSTASPPAS GLPPRFYVGH SIFKGKAALT VEPRPPEFLP LDSGAFKLSR  120
EGFVLLQFAP AAGVRQYDWS RKQVFSLSVT EIGTLISLGP RESCEFFHDP FKGKSEEGKV  180
RKVLKVEPLP DGSGHFFNLG VQNKLINMDE SIYIPVTRAE FAVLNSAFNF LLPYFIGWHA  240
FANSIKPNET SRVNNANPRI GGDYEWSSVG KIVSPDFVCS LCSDADAGSL N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-129Whirly family protein