PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO57295

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 237aa MW: 27349.7 Da PI: 4.5581

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO57295	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.4e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v s ++++ OMO57295 6 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVNS-QSRA 104 79**************************.99**********84335556888**********************************9.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLv+y+grap+g +tdWvmheyrl OMO57295 105 IGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 ***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MAPVGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVNS QSRAIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKECED TCGIQDSYAL CRVFKKNGIC PETEEQVQCS ISLMECSQGV 180 INESETMSPD LPLASSSCIE EEDKDDSWMQ FITDDAWCSS NNTIMPGDEL SNVGFTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-132	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO57295