PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57022
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 417aa    MW: 48300.6 Da    PI: 9.7124
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57022genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.71.5e-131151343
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
              +en+  r  tf kR  g+ KKAeEL +LC+++++++if+++
  OMO57022 11 VENEKTRAATFKKRIIGLKKKAEELTILCNVRICMVIFGPK 51
              79*************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MGRGKLRLEL VENEKTRAAT FKKRIIGLKK KAEELTILCN VRICMVIFGP KLKDKPLKVD  60
VWPSDRAQVK SMIHDCKTST SQKRIFTMSD YLNLRQKKVE DEIAQVRRAN FKARFPTWDV  120
RIDNLSSDQL ELLRSELDSK LEAAKIKLTA MKGIDQNHHH QAPHPQYTSD HLISAANFPP  180
KNLSDNYLQS HNFPLKTPSP FDHQIQAIPQ NSLDYGLFMG QHSGNQVQSN HLPMKINLNP  240
FDHHNIYGFP QKNLDYNGLI MGQQSGNFVQ SHHVPLKTTR NQFDHIQSFP HNKNYGLFMD  300
PQPPQAAGTC QILWATLLWA HLLVVTTMII KDFQLLIIMI QCIIPCKTMM FKQLPKPYDA  360
WFPPPSMQPD HQASNFDQLL YSESDPRLRS EFLGDFYRNM NHEDHDLANR AFKKQRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-19M-type_MADS family protein