PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56943

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 556aa MW: 61735.9 Da PI: 6.886

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56943	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2e-09	199	246	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OMO56943 199 SHSLAERARREKISKKMKCLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 246 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MLHSLPSLES CNYNGIDMTV LERQQARLKW VQQQQQEQNY VVQNNSNPVE LCASSVPQFQ 60 ALFASSLGSR QLVEQNRPEV YLGSDEFPKF VNFSVAGHGP DFVVAAPKAA ADYSISRTSS 120 CQMTAFQSAG MKEDGDNVIL DKMESTTCGE SLNKRKAEAK TKCSTEVSRN SSKENSKASE 180 VQKPDYIHVR ARRGQATDSH SLAERARREK ISKKMKCLQD LVPGCNKITG KAGMLDEIIN 240 YVQSLQRQVE FLSMKLAALN PSVEFNFDNL PAKEFPAYVA NFPAAAKLPA AMANLGCLQF 300 NPLQKEAVSC TVDATMHPPQ TTNEGIPSVP ASIPEQAISS SCITILFLES NQAQDLERFP 360 FPAKMATESS ESEEEGKITG GNQHLIVEDD LREMGKKAAW SVSSCKSGNG VSSLRDDNLE 420 TYWQSDGAQP HLVNIQFQKK VKLQLVVLYV DFKLDESYTP SKISIRAGDG FHNLKEIKTV 480 ELVKPTGWVY LSLSGNDPRE TFVNTFMLQI AVLSNHLNGR DTHVRQIKVY GPRPNPIPHQ 540 PFQFTSMEFI TYSTVR

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MLHSLPSLES CNYNGIDMTV LERQQARLKW VQQQQQEQNY VVQNNSNPVE LCASSVPQFQ  60
ALFASSLGSR QLVEQNRPEV YLGSDEFPKF VNFSVAGHGP DFVVAAPKAA ADYSISRTSS  120
CQMTAFQSAG MKEDGDNVIL DKMESTTCGE SLNKRKAEAK TKCSTEVSRN SSKENSKASE  180
VQKPDYIHVR ARRGQATDSH SLAERARREK ISKKMKCLQD LVPGCNKITG KAGMLDEIIN  240
YVQSLQRQVE FLSMKLAALN PSVEFNFDNL PAKEFPAYVA NFPAAAKLPA AMANLGCLQF  300
NPLQKEAVSC TVDATMHPPQ TTNEGIPSVP ASIPEQAISS SCITILFLES NQAQDLERFP  360
FPAKMATESS ESEEEGKITG GNQHLIVEDD LREMGKKAAW SVSSCKSGNG VSSLRDDNLE  420
TYWQSDGAQP HLVNIQFQKK VKLQLVVLYV DFKLDESYTP SKISIRAGDG FHNLKEIKTV  480
ELVKPTGWVY LSLSGNDPRE TFVNTFMLQI AVLSNHLNGR DTHVRQIKVY GPRPNPIPHQ  540
PFQFTSMEFI TYSTVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18300.2	3e-62	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO56943