PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56870

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 526aa MW: 54713.2 Da PI: 8.4874

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56870	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OMO56870 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.1	0.0012	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + OMO56870 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MPVDLDNSST ASGEASVSSS GNQNPPPKST AKKKRNLPGM PDPDAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESARAQTQPS SQNQNQAAAN PSSESDPKTQ AMESSSPPAP PPAPASVSAP 240 PPAAVQVSAS TTSVISSSVL PMQSGELQEN PTPILEEDPP PPPPPAPAGL NGSCSSSNSS 300 SSNGSSSSTV FASLFASSTA SASLQPPQPP AFTDVIRAMG RPERPADLAP STSTEPISLC 360 LSTNHGSSIF GTAGQERRQY APAPQPAMSA TALLQKAAQM GAAASNASLL RGFGIVSSSS 420 SSAQQDNLPW GQRQVEPDNA SVPAGLGLGL PIDGSSGLKE LMMGTPVFGP KQTTLDFLGL 480 GMAAGGSPNG GLSALITSIG GGLDVAAAAA SFGGGDYTGK DIGRNS

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MPVDLDNSST ASGEASVSSS GNQNPPPKST AKKKRNLPGM PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARAQTQPS SQNQNQAAAN PSSESDPKTQ AMESSSPPAP PPAPASVSAP  240
PPAAVQVSAS TTSVISSSVL PMQSGELQEN PTPILEEDPP PPPPPAPAGL NGSCSSSNSS  300
SSNGSSSSTV FASLFASSTA SASLQPPQPP AFTDVIRAMG RPERPADLAP STSTEPISLC  360
LSTNHGSSIF GTAGQERRQY APAPQPAMSA TALLQKAAQM GAAASNASLL RGFGIVSSSS  420
SSAQQDNLPW GQRQVEPDNA SVPAGLGLGL PIDGSSGLKE LMMGTPVFGP KQTTLDFLGL  480
GMAAGGSPNG GLSALITSIG GGLDVAAAAA SFGGGDYTGK DIGRNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-114	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO56870