PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56657
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 295aa    MW: 31734.2 Da    PI: 5.1495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56657genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.14.9e-16135181455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  OMO56657 135 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 181
               6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MGDNINVNMF HYSNNYTTNN NNGKCLSSPS DDISNLLHQI LVHSSSSSTG MANFGGPTED  60
PRRFSRSPPE QGMILGGDSC GKGSGGSGLA GAAGENDNDD YDCESEEGLE ALVDEAPPKP  120
ARARSSSKRS RAAEVHNLSE KRRRSRINEK MKALQNLIPN SNKTDKASML DEAIEYLKQL  180
QLQVQMLSMR NGLSLHPMCL PGVLQPIQFS QTRIDFGEEN GSLPVNVPGT VPANQETSSQ  240
IGYDLPNSSS NHASAPNMSN IMTSETSFGL EAIQAPLGPF QLLTPSLVSD HVSKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-50bHLH family protein