PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO55902
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 406aa    MW: 43664.9 Da    PI: 7.0606
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO55902genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-20191240255
       AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a+++a+++++g
  OMO55902 191 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRG 240
               7********.**********66.....56*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    
MCEIKKVANK KEQRGGISSR VLEQDNQWLL MYQPLIMRSE EESSSSSAPS SSSMMLSEAR  60
RGREMSAMVS ALTHVVAGDV PDHQEADGFG SFMSNYNNLN VSSSLGYGGQ KRGREEEEGG  120
GGSGGAGGGG MAVESVSKLC TQFGNFPHAA GRPVGSSSGG VRVSEANNTA QLVPTYEYNS  180
NENYREEPRR RYRGVRQRPW GKWAAEIRDP FKAARVWLGT FDTAEAAARA YDEAALRFRG  240
NKAKLNFPEN VKLRSPPSTN IPTTTQLTIS DSPTTLLSIP TSTEPIVHSQ SHNNYLVQSQ  300
NPQVSGGYFD YSQFFLGSGA TGNDYSRQQP MNLYDQILLS TSAAAQSSSL SASSMSTSSS  360
VSSSTPTSYP LVFPIQTSGQ GGGVGDFSVR WSDNSSSTPN YTSTSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.15e-18ERF family protein