PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO55888

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 247aa MW: 27925.3 Da PI: 9.2015

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO55888	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.8e-32	170	228	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ OMO55888 170 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 228 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MSSTTSQAML NQGLFEEQGD QIPSAAATQM GFFAFPPSLT SSLPFNCHQT LKAAFNNIAA 60 ASLYSPSAAS NLTETLFSSA TTQKHREDNI ASDFGGPQLL SLQRSSANFW AWGEVNESCL 120 GSKKMNNIGV EDNHHHHLGV SAMKMKRIKA RRKVREPRFC FKTMSDVDVL DDGYKWRKYG 180 QKVVKNTQHP RSYYRCTQDN CRVKKRVERL AEDPRMVITT YEGRHVHSPS HDLEDSQAPS 240 NLNNFFW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	2e-58	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO55888