PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO55878
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 334aa    MW: 38657.5 Da    PI: 9.4918
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO55878genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.94e-161252444
              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                +  r  t+ kR++g++KKA+E S+LC+++ +vi+++++ 
  OMO55878 12 AKEKVRLATYQKRKKGLIKKAHEFSILCGVDTCVILYGPKT 52
              55667889******************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MGRGKLNMKL IAKEKVRLAT YQKRKKGLIK KAHEFSILCG VDTCVILYGP KTKDGPSKLE  60
IWPSDQAKVM KVINKYKSKP LDARERKSFN VFDFLDARQK KIDDEIWKLR KSNLEAKFSP  120
WDERINNLAI DQIWALLSGF DSKLEAAKKK IKMMKENCHR HHCLIDESNQ PRLNVPDHQL  180
RPCIFPKNFD LEVTSRQQQQ QPMLGLKPFD MNVPSYYPFG PDEALPMQPF NSNPIDLSMK  240
KLTPNGFDYT QLDGESSSSI THNSSLSPQT GYDPMLDKVM FNNPWGLPIC FYPPFMQPMP  300
PFGHSSTAMP SFPSHQYGEF FDDQYESRNK EHKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11326KEKVRLATYQKRKK
22353KRKKGLIKKAHEFSILCGVDTCVILYGPKTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-25M-type_MADS family protein