PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO55545
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 308aa    MW: 34219.8 Da    PI: 6.1762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO55545genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.9e-10221264755
               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               ++ ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  OMO55545 221 IAAKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 264
               5679*******************5.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MALAKEPISF NENLFDHHQE ALEKNSGGIV KNFSMTSSSS FSSPSSVSSE GGFVFQGVNY  60
HQPQESDHNN SLISFMHGGN NGSLLSFEQN ERVVLQNTYL KTSSCEKDDY GIWDQQQDYN  120
QWNQKSISTD PRLVEDFNCF ETASNFNSMA SATKDHNHGD WLYSEVAVVA DSVQESGSPE  180
SPGLKRPNKG ENTQALKKQC TNEAKKAKTT KSGPSKDPQS IAAKNRRERI SERLKILQDL  240
VPNGSKVDLV TMLEKAISYV KFLQLQVKVL ATDEFWPVQG GKAPDISQVR EAIDAILSSQ  300
RDRNSSSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.13e-72bHLH family protein