PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO55384

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bZIP

Protein Properties

Length: 425aa MW: 45996.9 Da PI: 5.4177

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO55384	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.7	3.9e-16	220	276	3	59
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 + kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L eN +L k+l +++++ + OMO55384 220 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENATLVKRLTDISQKYNEA 276 689*******************************************99999988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MDRVFSVEEI SDHFWTSPSA AAAAATTAPA AVDDDNKPGS KMNRSASEWA FQQFLREEAD 60 NKSEDEEEEK EEDKEELKMM KKNGITKSLN GCLENNKNNS NNNVPMDSEE YQAFLKSKLN 120 LACAAVAMSR ASLVKPQDSA ARADSGSQSS STPQMGSKAT SKGAGDKDGN ALVGISSLPI 180 GQMKSVAQVR PSTSGSSREQ SDDDEVEGEN ETLDNMDPAD AKRVRRMLSN RESARRSRRR 240 KQAHLTELET QVSQLRVENA TLVKRLTDIS QKYNEAAVDN RVLKADVETL RAKVKMAEEM 300 VKRITGLNPL FQASPEISTM GVSSFDGSPS DTSTDAAVPV QDGQKHPFYQ AATNNPIPTH 360 DPRVNNALAD ISSVENIPPT SGGSTITGSK IGRTASLQRV ASLEHLQKRI RGDAALVGPQ 420 SNGKQ

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MDRVFSVEEI SDHFWTSPSA AAAAATTAPA AVDDDNKPGS KMNRSASEWA FQQFLREEAD  60
NKSEDEEEEK EEDKEELKMM KKNGITKSLN GCLENNKNNS NNNVPMDSEE YQAFLKSKLN  120
LACAAVAMSR ASLVKPQDSA ARADSGSQSS STPQMGSKAT SKGAGDKDGN ALVGISSLPI  180
GQMKSVAQVR PSTSGSSREQ SDDDEVEGEN ETLDNMDPAD AKRVRRMLSN RESARRSRRR  240
KQAHLTELET QVSQLRVENA TLVKRLTDIS QKYNEAAVDN RVLKADVETL RAKVKMAEEM  300
VKRITGLNPL FQASPEISTM GVSSFDGSPS DTSTDAAVPV QDGQKHPFYQ AATNNPIPTH  360
DPRVNNALAD ISSVENIPPT SGGSTITGSK IGRTASLQRV ASLEHLQKRI RGDAALVGPQ  420
SNGKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	242	RRSRRRKQ
2	237	242	SRRRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-74	bZIP family protein

Link Out ? help Back to Top
Ensembl	OMO55384