PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO54910

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 723aa MW: 80590.2 Da PI: 5.826

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO54910	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	63	4.6e-20	585	681	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W++++++ ++ks++y+l+ ++ +Fv+ ngL+egDf+v++ ++ ++++++++ OMO54910 585 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDFIVIY--SDvKCGKYLIR 681 79***********************999999****7778***99777777777777.******************..55599988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MKGEDIKDEA NSCSGFGGIE EKKVMGSTEE REMWVDDDDD NRVRQQEDEL LNDASIFYGD 60 FPPLPDFPCM SSSSSSSSTP APVKALACSS SASTASSSSS AASWAVLKSD ADEEHVEKRN 120 NGDHQNEAQN DVLVDGTSAA LSSTASMEIP QQPDQVMDDC MDVMENFGYM DLLDNNDFFD 180 PSSIFHHDDK GLEEFQQEQK PPQPQPQPPQ QVRMIYSNRN ELESQEDEKA SDDDDLAKVF 240 LEWLKSNKET VSAEDLRNVK IKKATIECAA RRLGGGREAM KQLLKLILEW VQTNHLQKRR 300 IKESASNNNI IDNIPNYQFQ DPFPNPNPSL NINSSAPPPP PEPNTCFSQP PIPWIPQPPY 360 MTDPSPGFAS VVGYMGDPFS NGAASHTYQQ ATTTDYPPLL DSAQTWPPTQ FALASQYNSF 420 PVPDNNNLHP APSPQPSAFP GYGNQYPCQY NNDQRLVRLG SSATKEARKK RMARQRRFAP 480 HHRNHHHNNQ QSQHQNQSVD PQHARLVNDN GVTVAAAQAN TGNWVYWPAG GVASNPPVLP 540 GDVAMAHHPV AVDRPAMQVQ TYQRQVATDR RQGWKPEKNL RFLLQKVLKQ SDVGNLGRIV 600 LPKKEAETHL PELEARDGIS IAMEDIGTSR VWNMRYRFWP NNKSRMYLLE NTGDFVRTNG 660 LQEGDFIVIY SDVKCGKYLI RGVKVRQSGP KSETKRAAKS QKNQHANSQA AANGSSASPT 720 HKQ

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MKGEDIKDEA NSCSGFGGIE EKKVMGSTEE REMWVDDDDD NRVRQQEDEL LNDASIFYGD  60
FPPLPDFPCM SSSSSSSSTP APVKALACSS SASTASSSSS AASWAVLKSD ADEEHVEKRN  120
NGDHQNEAQN DVLVDGTSAA LSSTASMEIP QQPDQVMDDC MDVMENFGYM DLLDNNDFFD  180
PSSIFHHDDK GLEEFQQEQK PPQPQPQPPQ QVRMIYSNRN ELESQEDEKA SDDDDLAKVF  240
LEWLKSNKET VSAEDLRNVK IKKATIECAA RRLGGGREAM KQLLKLILEW VQTNHLQKRR  300
IKESASNNNI IDNIPNYQFQ DPFPNPNPSL NINSSAPPPP PEPNTCFSQP PIPWIPQPPY  360
MTDPSPGFAS VVGYMGDPFS NGAASHTYQQ ATTTDYPPLL DSAQTWPPTQ FALASQYNSF  420
PVPDNNNLHP APSPQPSAFP GYGNQYPCQY NNDQRLVRLG SSATKEARKK RMARQRRFAP  480
HHRNHHHNNQ QSQHQNQSVD PQHARLVNDN GVTVAAAQAN TGNWVYWPAG GVASNPPVLP  540
GDVAMAHHPV AVDRPAMQVQ TYQRQVATDR RQGWKPEKNL RFLLQKVLKQ SDVGNLGRIV  600
LPKKEAETHL PELEARDGIS IAMEDIGTSR VWNMRYRFWP NNKSRMYLLE NTGDFVRTNG  660
LQEGDFIVIY SDVKCGKYLI RGVKVRQSGP KSETKRAAKS QKNQHANSQA AANGSSASPT  720
HKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-166	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO54910