PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO54007
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92050.5 Da    PI: 6.4671
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO54007genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OMO54007 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
              5679*****************************************************97 PP
2START1785.6e-561613692205
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100
               +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+ell+dk+ W ++++++++l+v+ ++  g+++l +++l+a
  OMO54007 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAELLKDKPSWFRDCRAVDVLNVLPTAngGTIELLYMQLYA 260
               7899******************************************************.**************************9999************ PP

               XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
     START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
               +++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ ++kt++
  OMO54007 261 PTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSmpaVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTM 361
               **************************************999999********************************************************* PP

               HHTXXXXX CS
     START 198 atlqrqce 205
                +l+++++
  OMO54007 362 VALRQLRQ 369
               *9999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    
MAMSCKDGKL GSLDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQNTTLATKD PSCESVVTSG QHHVTPQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCPGVAARAC GLVGLEPTRV AELLKDKPSW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE DGSLVVCERS LKNTQNGPSM  300
PAVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTVLAQKTT  360
MVALRQLRQI AQEVSQSNVT GWGRRPAALR ALSQRLSRGF NEALNGFTDE GWSMMGNDGM  420
DDVTILVNSS PDKLMGLNLS FANGFPSVSN AVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADSSIDAYSA AAVKVGPCSL PGSRVGGFGG QVILPLAHTI EHEEFLEVIK LEGIAHSPED  540
AIMPRDVFLL QLCSGMDENA VGTCAELIFA PIDASFADDA PLLPSGFRII PLDSGKEASS  600
PNRTLDLASA LEIGPAGNRS SSDYSANSGC VRSVMTIAFE FAFESHMQEH VASMARQYVR  660
SIISSVQRVA LALSPSHLSS HAGLRTPLGT PEAQTLARWI CQSYRVYMGV DLLKSSSEGG  720
EAILKTLWHH SDAIMCCSLK ALPVFTFANQ AGLDMLETTL VALQDISLEK IFDDHGRKTL  780
CTEFPQIMQQ GFACLQGGIC LSSMGRPVSY ERAVAWKVLN EEENAHCICF MFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein