PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO53982 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 27748.8 Da PI: 5.4946 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 7.9e-14 | 189 | 234 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k+Lq OMO53982 189 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKYLQ 234 689*********************7....688*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MQPTPGGSSS SSGGGGGGGE VSRSGLARFR SAPATWLEAL FEEGEEDLLK PNQCLTQLLT 60 SSSTATRFPN SADPTGLFDE PPTGFQRQNS SPADFLANTS AAASDAYFSN FGIPPNYDYL 120 SPSIDVSPSS KRNREPDSQF TPTKFQSQLK GEQSGGVSNL IDVDMEKLLE DSVPCRVRAK 180 RGCATHPRSI AERVRRTRIS DRIRKLQELV PNMDKQTNTA DMLEEAVEYV KYLQSQIQEL 240 TELQRKCKCK TKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 1e-84 | bHLH family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO53982 |