PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO53705 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 470aa MW: 49305.2 Da PI: 7.904 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.5 | 4.1e-12 | 44 | 68 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ OMO53705 44 EADCIYYLRTGFCGYGSRCRFNHPR 68 789********************96 PP | |||||||
2 | zf-CCCH | 39.5 | 9.6e-13 | 89 | 113 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtCk+G++Ck++H++ OMO53705 89 QPVCQYFMRTGTCKFGASCKYHHPK 113 689********************96 PP | |||||||
3 | zf-CCCH | 35.1 | 2.2e-11 | 134 | 158 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++CkF+H+ OMO53705 134 GEKECSYYVKTGQCKFGATCKFHHP 158 7899********************8 PP | |||||||
4 | zf-CCCH | 38.7 | 1.6e-12 | 295 | 321 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p OMO53705 295 PGQPECQYYMKTGDCKFGSSCRYHHPP 321 5789*********************97 PP | |||||||
5 | zf-CCCH | 33.1 | 9.8e-11 | 343 | 367 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G Ck+G+ C+F H++ OMO53705 343 APPCTHYSQRGVCKFGAACRFDHPM 367 689********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence |
MERGPESDPQ PEWTAPGPET GLEEPVWRLG LGGGPESYPE RPEEADCIYY LRTGFCGYGS 60 RCRFNHPRDR AAVNYPGAAA GEYPERVGQP VCQYFMRTGT CKFGASCKYH HPKQGGSSAS 120 PVPLNYYGYP LRPGEKECSY YVKTGQCKFG ATCKFHHPAP PAVQVLAPSP APQVAPVPAP 180 VPPPALYSTV QSPSGPSSQQ YGVVMARPPL MPGSYVQGPY GPLLLSPGMV SVPSWNPYQA 240 PGSPGTQPTV GSSSIFGVTP LSPSAPAYTG SYQPVPSGGV PSSSSQKEPS FPERPGQPEC 300 QYYMKTGDCK FGSSCRYHHP PEVIAPKADV ILSPLGLPLR PGAPPCTHYS QRGVCKFGAA 360 CRFDHPMGTL SYSPSASSLA DMPVAPYPVG STIGTLAPSS SSSELRPELI SGSSKETAPV 420 IMSSSVSSSS ESVGSVFSKG APVPHSSSQQ SSQNTASSTS SGSTEARPST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-131 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO53705 |