PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO53353

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 515aa MW: 56942.4 Da PI: 5.8202

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53353	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l d+vk++G g+W+++ ++ g+ R++k+c++rw ++l OMO53353 28 KGPWTSAEDAILMDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 75 79******************************************9986 PP
2	Myb_DNA-binding	48.3	2.4e-15	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +T+eE+ ++++++lG++ W++ a++++ gRt++++k++w++ OMO53353 81 KGVFTPEEERCVIELHARLGNK-WARMAAELP-GRTDNEIKNYWNT 124 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MRKHYSDFSS HEEGSRRGNM RENSHLKKGP WTSAEDAILM DYVKKHGEGN WNAVQKHSGL 60 SRCGKSCRLR WANHLRPDLK KGVFTPEEER CVIELHARLG NKWARMAAEL PGRTDNEIKN 120 YWNTRIKRLQ RAGLPIYPPD VCLQVNRSQE ESHNAASVPA GDSYASNLLQ ADAFEIPRVE 180 FENLELNQRF LSYTPGLLDI PANNTMLKQV AGSPCSYGLM FPIARPNKRL RESVSNYLST 240 PNQLTENCYK KHLDEPFKLS SLYDSVLSTN EQSSFGIPPS SNSLLGSNLS PSEPMSGPNK 300 LELPSNQYSD TQQDSWGNPP FPQPLIESVD TLIQSPPMEQ ASDGLTPQNS GLLEAVLYES 360 QKFSKDDSCQ QSSTASVLDD IGNHSHKQRE MEYEAHCDSN SPLAHSAASV FSEYTPVSGS 420 SSDEHQFVDS ILGENILHPI NLMACTFIYI NINTILTLHA GCNGKTETSK QTAVSGIDDF 480 LGTGQFGHIN GCAGNKPIVT DAIAALLGED NCCGY

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MRKHYSDFSS HEEGSRRGNM RENSHLKKGP WTSAEDAILM DYVKKHGEGN WNAVQKHSGL  60
SRCGKSCRLR WANHLRPDLK KGVFTPEEER CVIELHARLG NKWARMAAEL PGRTDNEIKN  120
YWNTRIKRLQ RAGLPIYPPD VCLQVNRSQE ESHNAASVPA GDSYASNLLQ ADAFEIPRVE  180
FENLELNQRF LSYTPGLLDI PANNTMLKQV AGSPCSYGLM FPIARPNKRL RESVSNYLST  240
PNQLTENCYK KHLDEPFKLS SLYDSVLSTN EQSSFGIPPS SNSLLGSNLS PSEPMSGPNK  300
LELPSNQYSD TQQDSWGNPP FPQPLIESVD TLIQSPPMEQ ASDGLTPQNS GLLEAVLYES  360
QKFSKDDSCQ QSSTASVLDD IGNHSHKQRE MEYEAHCDSN SPLAHSAASV FSEYTPVSGS  420
SSDEHQFVDS ILGENILHPI NLMACTFIYI NINTILTLHA GCNGKTETSK QTAVSGIDDF  480
LGTGQFGHIN GCAGNKPIVT DAIAALLGED NCCGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	1e-80	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO53353