PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO53189

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 179aa MW: 21079.4 Da PI: 4.8311

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53189	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	88.7	1.1e-27	16	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn..ratk..sgyWkatgk..dkevl 93 lp G+rF Ptdeelv++y +kv ++l+++++ i+ ++ y++ P++L +++++e++w+fF+ d +++k+ r + g+W++ g +k++l OMO53189 16 LPIGYRFVPTDEELVNHYFMNKVLCNPLPASTFheIHATKFYSMPPKSLV-EFASDERQWFFFIDDDDDDDDDEKKKgiRRVGdgVGFWHSNGDeeEKPIL 115 699**********************665443349*********6.7788999**99988875444431132223479999755789* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g++ k L++++g+ ++++kt+W m++yrl OMO53189 116 DPNGNVLAFKLHLIYFSGTLSNPKKTHWSMDQYRL 150 *********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence
MEGQDHIEDF GDHDQLPIGY RFVPTDEELV NHYFMNKVLC NPLPASTFHE IHATKFYSMP 60 PKSLVEFASD ERQWFFFIDD DDDDDDDEKK KGIRRVGDGV GFWHSNGDEE EKPILDPNGN 120 VLAFKLHLIY FSGTLSNPKK THWSMDQYRL PNQFYSLHNL KEEWAVGRLR RGRDYNFGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	8e-17	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO53189