PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO52911

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 647aa MW: 74236.8 Da PI: 5.1718

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO52911	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.7	1.1e-19	47	131	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGF++r+ +s+ks+ +g ++r + C+ + ++++++ +++ ++r +C a++++++ k+g+w+++k++ +HnH+l+ OMO52911 47 RFYDNYARQVGFTTRVLSSHKSECDGLLISRGLGCKGYCGDQTKDQL-----KKQDKQRENCPAMIHLRRYKTGRWMIKKFVRDHNHPLV 131 5********************************988777776655.....789999****************************96 PP
2	FAR1	89.9	3.5e-28	286	374	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGFs+r+ +s+ks+ +g+i++r++ C+keg++ +++k+ + + r+r+++r gC a+l v+k+k+gkw+++k+e+eH+H+l+ OMO52911 286 FYDEYARRVGFSTRIISSRKSELDGSIIHRRLACNKEGFNLNRQKSGRVRVRKRESKREGCMARLIVRKDKSGKWVISKFEKEHSHPLF 374 9*******************************************99999**********************************96 PP
3	FAR1	84	2.4e-26	481	572	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+e+ +k+e++ +r+ tr gC+a+l++ ++ gkw+++++ +eHnHel+p OMO52911 481 EFYEMYGRRLGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKCTKREDR-VlpSRPATREGCNAMLRIAAKDGGKWVIYSFIKEHNHELNP 572 6***************************************998883333.2459********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence
MTVEEEVDDV DGRLEASTGD ESNMHEYDSI QEPYLDMIFE SAEAASRFYD NYARQVGFTT 60 RVLSSHKSEC DGLLISRGLG CKGYCGDQTK DQLKKQDKQR ENCPAMIHLR RYKTGRWMIK 120 KFVRDHNHPL VIELEENHSR LDEEKDKKIQ ELSAELRVKK RLSASYLEKE NVMEGEVVRT 180 ESCIEGESDV CEAETSKEEK VLMTEHGIEG DSDACEANTS KEERVLMTES CVEGESDACE 240 ADTNKGEKVL NTESCTGDES GLCELDLNQE PHEGMLFESV EAAKAFYDEY ARRVGFSTRI 300 ISSRKSELDG SIIHRRLACN KEGFNLNRQK SGRVRVRKRE SKREGCMARL IVRKDKSGKW 360 VISKFEKEHS HPLFVTSLND QSNTDDKDKK IQELSSELDR ANEEFAMASS SGQGLNSSSN 420 YRQWLAETFD GHEMLDDELS DSNVDGNGNL INPSDQSFPM TLEPGEPYIG MEFESAEDAR 480 EFYEMYGRRL GFTIRNNRTR RSLKDNSIIG REFVCSKEGF RAEKCTKRED RVLPSRPATR 540 EGCNAMLRIA AKDGGKWVIY SFIKEHNHEL NPNKIPPRRS HRIAFCEDKK DLKIRELATE 600 LHREKRKSAA YQEQLQMVLK YIEEHTQQLS LKVDVVSKNL RELESED

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence

MTVEEEVDDV DGRLEASTGD ESNMHEYDSI QEPYLDMIFE SAEAASRFYD NYARQVGFTT  60
RVLSSHKSEC DGLLISRGLG CKGYCGDQTK DQLKKQDKQR ENCPAMIHLR RYKTGRWMIK  120
KFVRDHNHPL VIELEENHSR LDEEKDKKIQ ELSAELRVKK RLSASYLEKE NVMEGEVVRT  180
ESCIEGESDV CEAETSKEEK VLMTEHGIEG DSDACEANTS KEERVLMTES CVEGESDACE  240
ADTNKGEKVL NTESCTGDES GLCELDLNQE PHEGMLFESV EAAKAFYDEY ARRVGFSTRI  300
ISSRKSELDG SIIHRRLACN KEGFNLNRQK SGRVRVRKRE SKREGCMARL IVRKDKSGKW  360
VISKFEKEHS HPLFVTSLND QSNTDDKDKK IQELSSELDR ANEEFAMASS SGQGLNSSSN  420
YRQWLAETFD GHEMLDDELS DSNVDGNGNL INPSDQSFPM TLEPGEPYIG MEFESAEDAR  480
EFYEMYGRRL GFTIRNNRTR RSLKDNSIIG REFVCSKEGF RAEKCTKRED RVLPSRPATR  540
EGCNAMLRIA AKDGGKWVIY SFIKEHNHEL NPNKIPPRRS HRIAFCEDKK DLKIRELATE  600
LHREKRKSAA YQEQLQMVLK YIEEHTQQLS LKVDVVSKNL RELESED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-45	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO52911