PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO52898

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bZIP

Protein Properties

Length: 696aa MW: 75637.2 Da PI: 7.0883

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO52898	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.4	5.6e-12	201	261	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e k+ r+++NRe+A+ sRqRKk+++eeLe+kv ++ + ++L +++ e a+l++++ OMO52898 201 EEKKRARLMRNRESAQLSRQRKKQYVEELEDKVRTMHSTITDLNNRVAYFMAENATLRQQL 261 568999*************************************999999999999998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MEPDMGSELD LLAIPPMDPL YFSTDLGFPL DNDNDDFDIN FDDLDQFDFP SDLDNLLTPD 60 SSTTPDSYVE QYLNSSSQEL GSCNSPDSSG NCASAISGGI PHSPVSSLGS GNCASAISGT 120 VNASCPDSEN IVEQKVSVEE MGKKRISKRK KENEEITKRK KENEEINSSK FTRSSLPATV 180 NNSDFNSDTS IQNPNDVSEG EEKKRARLMR NRESAQLSRQ RKKQYVEELE DKVRTMHSTI 240 TDLNNRVAYF MAENATLRQQ LSNGGAGGGG GTAMCPPQTL PMPMYPPMAY PWMPCAPPYV 300 LNPPGSQVPL VPIPRLKPQK QQVPTSKAKK SESKTKKVAS ISLLGVLFFI LLLGGLVPIM 360 NVRHDNTPVG SGFVGDGFYE VHRGRVLRVD GHLNGSHNSR DAALPDGRFD RNGVHGRGSE 420 SGVEHKATGA QNMGNGSEPL TASLYVPRND KLVKIDGNLI IHSVLASEKA MAFPKASQIK 480 NKETGLAIPK HFPPALAFSD AGENKGHSRE YRNPAERLMA LSSGKADALK DHFMSSAADG 540 KMQQWFREGV AGPMLSSGMC TEVFQFDVSA PGAIIPASSV KNISSAEHRK NATQVNKGRN 600 RRILHRNPVP LPGSDLNITE HVGRNSPKEN FQGNKTASSM VVSVLIDPRE AGDVDKDDMI 660 VPKSLSRIFV VVLLDSVKYV TYSCMLPRSG LHLVTA

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MEPDMGSELD LLAIPPMDPL YFSTDLGFPL DNDNDDFDIN FDDLDQFDFP SDLDNLLTPD  60
SSTTPDSYVE QYLNSSSQEL GSCNSPDSSG NCASAISGGI PHSPVSSLGS GNCASAISGT  120
VNASCPDSEN IVEQKVSVEE MGKKRISKRK KENEEITKRK KENEEINSSK FTRSSLPATV  180
NNSDFNSDTS IQNPNDVSEG EEKKRARLMR NRESAQLSRQ RKKQYVEELE DKVRTMHSTI  240
TDLNNRVAYF MAENATLRQQ LSNGGAGGGG GTAMCPPQTL PMPMYPPMAY PWMPCAPPYV  300
LNPPGSQVPL VPIPRLKPQK QQVPTSKAKK SESKTKKVAS ISLLGVLFFI LLLGGLVPIM  360
NVRHDNTPVG SGFVGDGFYE VHRGRVLRVD GHLNGSHNSR DAALPDGRFD RNGVHGRGSE  420
SGVEHKATGA QNMGNGSEPL TASLYVPRND KLVKIDGNLI IHSVLASEKA MAFPKASQIK  480
NKETGLAIPK HFPPALAFSD AGENKGHSRE YRNPAERLMA LSSGKADALK DHFMSSAADG  540
KMQQWFREGV AGPMLSSGMC TEVFQFDVSA PGAIIPASSV KNISSAEHRK NATQVNKGRN  600
RRILHRNPVP LPGSDLNITE HVGRNSPKEN FQGNKTASSM VVSVLIDPRE AGDVDKDDMI  660
VPKSLSRIFV VVLLDSVKYV TYSCMLPRSG LHLVTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	161	KKRISKRKKENEEITKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	1e-158	bZIP family protein

Link Out ? help Back to Top
Ensembl	OMO52898