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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OMO51554 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | NAC | ||||||||
| Protein Properties | Length: 237aa MW: 27212.4 Da PI: 6.6313 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 55.1 | 2.6e-17 | 8 | 166 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.......tgkrknra................ 77
l+pGfrF+Pt e +++ yL++ ++g+kl++ ++++e+diy ePw+L + +++++ w f ++k+++ t +
OMO51554 8 LAPGFRFRPTGEVILQSYLRPLINGEKLPF-DILTEADIYGDkEPWKLF-NPQHSHSYWVFTQLKKKRNSdsdsdsvT------Kqtkkkkiitrktnkkk 100
579***************************.99*******7559****5.3333344444444444433333333221......02233345667777777 PP
NAM 78 .........tksgyWkatgkdkevlskkgelvglkktLvfy........kgrapkgektdWvmheyrl 128
+ g+Wka ++++s++ge++g + +f +g+ ++ + +W+mh++++
OMO51554 101 egdsyydrtAGCGFWKARYC-NDIVSSDGEKIGFDREYTFKlkdeddddEGSG-SSPNGNWIMHQFSF 166
777777775789****9987.5566669********99999877665432222.22478*******86 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 237 aa Download sequence |
MRMALESLAP GFRFRPTGEV ILQSYLRPLI NGEKLPFDIL TEADIYGDKE PWKLFNPQHS 60 HSYWVFTQLK KKRNSDSDSD SVTKQTKKKK IITRKTNKKK EGDSYYDRTA GCGFWKARYC 120 NDIVSSDGEK IGFDREYTFK LKDEDDDDEG SGSSPNGNWI MHQFSFEGCD DLVICEIKNS 180 NSGGTRKRKH IELDSNVTKK LSVADHHGRL KQLQGADAHD DETEAFLNEV LNFGLEW |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 70 | 90 | KKKRNSDSDSDSVTKQTKKKK |
| 2 | 70 | 100 | KKKRNSDSDSDSVTKQTKKKKIITRKTNKKK |
| 3 | 71 | 91 | KKKRNSDSDSDSVTKQTKKKK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G27410.2 | 1e-12 | NAC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO51554 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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