PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO50890

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HD-ZIP

Protein Properties

Length: 268aa MW: 30099 Da PI: 7.4182

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO50890	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7.2e-20	123	177	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k OMO50890 123 RKKLRLSKEQAAILEDSFKEHSTLNPKQKQALAEHLNLRPRQVEVWFQNRRARTK 177 788899***********************************************98 PP
2	HD-ZIP_I/II	124.7	4.3e-40	123	211	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL+ke +eL+ + OMO50890 123 RKKLRLSKEQAAILEDSFKEHSTLNPKQKQALAEHLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQKELQELK-S 211 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MGFDDICNTG LNLGLGCLVK QEKYSPSDHQ QQKKKKLLLK DDQFFPSLTL GPSDDIYQLS 60 AANKLAHGES IDLHQQQQAS SISGVSSFSN SSVKKEKDIC GEEVELERMS SRVSDEDDEG 120 SPRKKLRLSK EQAAILEDSF KEHSTLNPKQ KQALAEHLNL RPRQVEVWFQ NRRARTKLKQ 180 TEVDCELLKK CCETLTEENK RLQKELQELK SLKLTTSYYM QLPAATLTMC PSCERVAGTG 240 EGPSSTSPFT IGQKSHFFNP FTHPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	180	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-68	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OMO50890