PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO50116
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 121aa    MW: 14019.4 Da    PI: 10.4359
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO50116genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-13592186
              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE.E-S CS
        B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk.ldg 86
              f k+l++ dv k+  l +p + +++++++ ++s+    ed +sgr W++ ++  +++g     v++kGW +Fvk ++L++gD v F+ l++
  OMO50116  5 FRKQLSKTDVEKR--LAIPTSSLQAFNLNGACSVGFEAEDmLSGRIWQFHCTT-RTKGFyskPVISKGWVQFVKFKQLRVGDRVAFYkLNQ 92
              8899988888775..9**********99999********************54.333334568999********************94433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    
MNSLFRKQLS KTDVEKRLAI PTSSLQAFNL NGACSVGFEA EDMLSGRIWQ FHCTTRTKGF  60
YSKPVISKGW VQFVKFKQLR VGDRVAFYKL NQHEHEAQLV PYKIEVERKI ELLGKLVWAK  120
V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-07B3 family protein