PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO49652
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Nin-like
Protein Properties Length: 268aa    MW: 29655.2 Da    PI: 8.4508
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO49652genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK69.54.8e-221459348
    RWP-RK  3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
              +++s++d+++ Fslp+ dAA++Lgvc++vLK+iCR++G++RWPhRk
  OMO49652 14 QSLSFDDIAELFSLPLYDAASTLGVCASVLKKICRENGLDRWPHRK 59
              789******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MSFHQQYLNS TTAQSLSFDD IAELFSLPLY DAASTLGVCA SVLKKICREN GLDRWPHRKY  60
LSGKSIEEIK KNAAKEKRKE LNELSKIHRL SSSQQQNNEV SKLQGVAAQP NLQQQGTKNI  120
QTGQPLNFGH QSLMTGMTTS DEFKYGFPSD GLSIITNKWW GSSKSDDNDD INVDGTETDG  180
EDKNQSIEKP DGADGKPEEN GKVEDGVGPQ GSGLLTAVRK RAVEEGREAL KLGVYRRCGM  240
KRLGKKEASL LLRIFKSSLP KEWLHGPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.14e-10Nin-like family protein