PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO49618
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARF
Protein Properties Length: 812aa    MW: 89607.6 Da    PI: 6.1801
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO49618genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.1e-24128229199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l++
  OMO49618 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLL 224
               99*****************************8544444..48************************************************..8899999** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  OMO49618 225 GIRRA 229
               **997 PP
2Auxin_resp119.33e-39254337183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k
    OMO49618 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVK 337
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    
MRLSSSGFNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGTP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDAVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPS ALPSFHAFKD GDMSINSQLM WLQGGLGDQG IQSLNFQGFG  420
VSPWMQPRLD SSSIPGVQPD LYQAMAAAAL QEMRTVESSK IGSQSLLQFQ QPQSTSNGPP  480
ALIQRQILQQ SQTQNAFLQN LQENQTAAQS ILGSLSQNGA SHLLNLNGSN PIISSSALLS  540
KPVAVEPQLS GAASCVLPQV EQLGTAQSNV SELSNLLPPF PGREYSAYHG SADPQNNLLF  600
GVSIDSSSLM LQHGMTNLKN IGNENDSMSL PYAASNFTSA SGTDFPLNSD MTTSSCVDES  660
GYLQSSENVD QVNPPTGTFV KVHKSGSFGR SLDISKFSSY DELRSELARM FGLEGQLEDP  720
QRSGWQLVFV DRENDILLLG DDPWQEFVNN VWYIKILSPL EVQQMGKEGL NPASSVPNQR  780
HTTSSNHCDD YMTRQDLRSS GNGIASLGSL EY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein