PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO49600

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 546aa MW: 59885.5 Da PI: 7.243

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO49600	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.6	8.3e-17	353	399	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq OMO49600 353 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 399 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MNHCLPDWNF ESDLPISNHK KFLGQDNELV ELLWQNGQVV LHSQNPKKHV SVPCESRQVT 60 RNDQPTLRGG ATGFSYGNSS HLTHEDETVS WIQYPLEDTF EKEFCTNFFS ELPASDPMET 120 DDSNNKPNRD QHQQQFVKSS SVSPAIQHSM ITSSQQLNVS PVVPEFRGNP MPPPKFQFDS 180 AQQNKSSEGL NKGFNFSPVV EQAGGMNRDG GNLMQREVIK ECSGMTVGSS YCGSNQVRND 240 VDFSRGSSNG FGTTTTGLSA GTSKDDAGKA IAQNKGAKTE TIEPTVTSSS GGSGSSFDRT 300 GKQSTGAISS HKRKSRDGDD SECQSEAAEL QSAAGNKQMQ RSGTSRRSRA AEVHNLSERR 360 RRDRINEKMR ALQELIPHCN KTDKASMLDE AIEYLKSLQL QLQVMWMGSG MAPMMFPGIQ 420 HYMSRMGMGM GPPTMPSIHN PLHLSRLPVV DQSMSMAPSQ NQAATCQTQQ LNPANYQIPM 480 QNPTFSEQYA RFLGFHHMQT ASQPMNMFGY GSQNAQQSPM VSAPSSSGKP LNGAATTTNT 540 SLSGKM

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MNHCLPDWNF ESDLPISNHK KFLGQDNELV ELLWQNGQVV LHSQNPKKHV SVPCESRQVT  60
RNDQPTLRGG ATGFSYGNSS HLTHEDETVS WIQYPLEDTF EKEFCTNFFS ELPASDPMET  120
DDSNNKPNRD QHQQQFVKSS SVSPAIQHSM ITSSQQLNVS PVVPEFRGNP MPPPKFQFDS  180
AQQNKSSEGL NKGFNFSPVV EQAGGMNRDG GNLMQREVIK ECSGMTVGSS YCGSNQVRND  240
VDFSRGSSNG FGTTTTGLSA GTSKDDAGKA IAQNKGAKTE TIEPTVTSSS GGSGSSFDRT  300
GKQSTGAISS HKRKSRDGDD SECQSEAAEL QSAAGNKQMQ RSGTSRRSRA AEVHNLSERR  360
RRDRINEKMR ALQELIPHCN KTDKASMLDE AIEYLKSLQL QLQVMWMGSG MAPMMFPGIQ  420
HYMSRMGMGM GPPTMPSIHN PLHLSRLPVV DQSMSMAPSQ NQAATCQTQQ LNPANYQIPM  480
QNPTFSEQYA RFLGFHHMQT ASQPMNMFGY GSQNAQQSPM VSAPSSSGKP LNGAATTTNT  540
SLSGKM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	363	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	2e-62	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO49600