PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO49428

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 555aa MW: 60276.1 Da PI: 4.8058

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO49428	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.7e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l OMO49428 39 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	53.9	4.1e-17	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l++++++++G++ W++ a++++ gRt++++k++w++ OMO49428 92 KGAFTQEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MSHTKNERED GMLSKDQTDS PLADDGNCGG AGAGVVLKKG PWTSAEDAIL IDYVKKHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTQEEE QLIIELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES HSSSAVNGGD KGSQDILQNN 180 SYEIPDVIFD SLKANQSVLP YVPELPDMST SSMLMKGLGS SQYCSFISPT IHRQKRLRES 240 AAFFSGYTGV VKNECPLFEH FEDDISDKAS RSFGLSFPIE PDPTAKTSQS FGVFSGSHAL 300 SNGNFSASEP ALEAVKLELP SLQYPETELG NWGTLSCPPP LLESVDAFIQ SPPPTSGVES 360 DSLSPRNSGL LDALLHEAKT ISSAKNHVSE KSSNSSTPGD IAESSNFNVC ETEWENCGEP 420 LSPMGHSATS LFSECISASG SSLDEQPPAE NFTESHVKSE PGDRVLTPEI QREAPIRLDS 480 TRPDSLLASN WLEQASGYDK DQSIMTDAIA TLLGDDLTSE YKNMAAGASI ASQAWGLGSC 540 AWNNMPAVCQ MSELP

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MSHTKNERED GMLSKDQTDS PLADDGNCGG AGAGVVLKKG PWTSAEDAIL IDYVKKHGEG  60
NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTQEEE QLIIELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES HSSSAVNGGD KGSQDILQNN  180
SYEIPDVIFD SLKANQSVLP YVPELPDMST SSMLMKGLGS SQYCSFISPT IHRQKRLRES  240
AAFFSGYTGV VKNECPLFEH FEDDISDKAS RSFGLSFPIE PDPTAKTSQS FGVFSGSHAL  300
SNGNFSASEP ALEAVKLELP SLQYPETELG NWGTLSCPPP LLESVDAFIQ SPPPTSGVES  360
DSLSPRNSGL LDALLHEAKT ISSAKNHVSE KSSNSSTPGD IAESSNFNVC ETEWENCGEP  420
LSPMGHSATS LFSECISASG SSLDEQPPAE NFTESHVKSE PGDRVLTPEI QREAPIRLDS  480
TRPDSLLASN WLEQASGYDK DQSIMTDAIA TLLGDDLTSE YKNMAAGASI ASQAWGLGSC  540
AWNNMPAVCQ MSELP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-147	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO49428