PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW20721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25730.7 Da PI: 9.6193 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.8 | 3.7e-15 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s+r+ ++ kR+n ++KK +E+S+LC+++++ i+++++ OIW20721 11 IANDSKRKESYKKRKNSLIKKTNEISTLCGIDACAIVYGQN 51 89*************************************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MARKKVNLSY IANDSKRKES YKKRKNSLIK KTNEISTLCG IDACAIVYGQ NEPQPEVWPS 60 HLGVQRVLQK FGRMSQMEQS KKMMNQETFL KQSIIKAKEQ LKKQKNENRK KEMALFMFNC 120 LSIGTLANTV NMADLNDLLW MIDQTLKEIE QKQTQEEPKE AILMTATGID ALNWEKVPMD 180 GHIQNMTQTN VNAMQKQNLL MDSVNAGWNE MFQFGDFNPQ NGF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVNLSYIANDSKRKESYKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-46 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW20721 |