PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIW18469

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 474aa MW: 50124.1 Da PI: 8.259

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW18469	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.7	6.8e-12	37	61	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +f+++G+C yG+rC+F+H+ OIW18469 37 DEADCIYFLKNGFCGYGSRCRFNHP 61 6799********************9 PP
2	zf-CCCH	37.6	3.7e-12	85	109	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++++r+G Ck+G++Ck++H++ OIW18469 85 QPLCQYYMRMGSCKFGPSCKYHHPR 109 79*********************96 PP
3	zf-CCCH	36.2	9.8e-12	131	155	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G +CkF+H++ OIW18469 131 EKECSYYLKTGQCKFGTTCKFHHPQ 155 689********************97 PP
4	zf-CCCH	38.4	2e-12	296	320	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++++tG+Ck+G++C+++H+ OIW18469 296 DQPECQYYMKTGECKFGPSCRYHHP 320 689*********************8 PP
5	zf-CCCH	28.8	2.1e-09	344	367	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++ + G Ck+G+ CkF H++ OIW18469 344 SVCTHYTQRGVCKFGPACKFDHPM 367 68********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MERYGHQNEG SQSDPSPEWG YEESSLQGVE SYPQRPDEAD CIYFLKNGFC GYGSRCRFNH 60 PLHRAGVVTG AARIGVGEHP ERVGQPLCQY YMRMGSCKFG PSCKYHHPRQ GAGIAAPVSL 120 NYYGYPLRTG EKECSYYLKT GQCKFGTTCK FHHPQPAGIQ IPAPSSVPPV SPLPMPIPSP 180 LYPTVQPPSG PSSQQYGVLV ARPPFLPGSL VQGPYGPMML SPTMVPFSGW GPYQGPATSP 240 LLPSSTPSNV GSTQFYGIAQ LPSSATAYAG PYQASGSLIG PSASDQKEHS LPERPDQPEC 300 QYYMKTGECK FGPSCRYHHP ADMSAPKANV ILSPVGLPLR PGASVCTHYT QRGVCKFGPA 360 CKFDHPMGSL SYSPSASSLS DMPVAPYPVG SSRGTLASSS SSSELRPDLA SGSSKEPGSY 420 RMSSSMSTST GSVGLTLSTG GPISQSGTQS SVQSSSPVST TNASTSSTVT YTSS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MERYGHQNEG SQSDPSPEWG YEESSLQGVE SYPQRPDEAD CIYFLKNGFC GYGSRCRFNH  60
PLHRAGVVTG AARIGVGEHP ERVGQPLCQY YMRMGSCKFG PSCKYHHPRQ GAGIAAPVSL  120
NYYGYPLRTG EKECSYYLKT GQCKFGTTCK FHHPQPAGIQ IPAPSSVPPV SPLPMPIPSP  180
LYPTVQPPSG PSSQQYGVLV ARPPFLPGSL VQGPYGPMML SPTMVPFSGW GPYQGPATSP  240
LLPSSTPSNV GSTQFYGIAQ LPSSATAYAG PYQASGSLIG PSASDQKEHS LPERPDQPEC  300
QYYMKTGECK FGPSCRYHHP ADMSAPKANV ILSPVGLPLR PGASVCTHYT QRGVCKFGPA  360
CKFDHPMGSL SYSPSASSLS DMPVAPYPVG SSRGTLASSS SSSELRPDLA SGSSKEPGSY  420
RMSSSMSTST GSVGLTLSTG GPISQSGTQS SVQSSSPVST TNASTSSTVT YTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-132	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW18469