PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIW17400

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 270aa MW: 28702.6 Da PI: 9.0353

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW17400	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.6e-07	11	34	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H OIW17400 11 KSKPCTKFFSTSGCPFGESCHFLH 34 7789******************** PP
2	zf-CCCH	23.8	7.9e-08	76	101	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+ f Ck+Gd+C++aHg+ OIW17400 76 KSRICSKFNTAEGCKFGDKCHYAHGE 101 6799********************96 PP
3	zf-CCCH	33.7	6e-11	237	261	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++f + G C +G+rC+FaHg OIW17400 237 FKTKLCDNFTK-GSCTFGERCHFAHG 261 69*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MDSLSTGVGS KSKPCTKFFS TSGCPFGESC HFLHYVPGGY NAVAHMIHIK PAAPPPSRDV 60 VAPSLGPNGS GQPTVKSRIC SKFNTAEGCK FGDKCHYAHG EWELGKPTAP SFDDHRPVGP 120 PLARRMPGRM ETPPGLGASF GANATAKISV EASLAGAIIG KGGVNSKQIC RQTGVKLSIR 180 DHESDPNIRN IELEGSFEQI KEASNMVKEL LFTLQMHAPP KPTHGVPSRH APPGSNFKTK 240 LCDNFTKGSC TFGERCHFAH GAAELSNRGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	9e-79	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW17400