PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIW15441

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 356aa MW: 39840.3 Da PI: 7.4036

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW15441	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.9	8.4e-09	33	53	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ OIW15441 33 ICTFYQK-GACVYGSRCRYDHV 53 7****.***********7 PP
2	zf-CCCH	19.8	1.5e-06	138	159	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C++G++C+ +Hg OIW15441 138 PICS-FAAAGSCPRGEKCPHIHG 159 6788.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MARVLCKFFA HGACLKGEHC EFSHDWKVPS NNICTFYQKG ACVYGSRCRY DHVKASRLPS 60 STPSSSVTER QPVVLDSVIF ANTIMTSNGV GTAADVSPSG GAYLLPSQPA WIQESEYQDF 120 SGEDDIGQSR ITSPSELPIC SFAAAGSCPR GEKCPHIHGD LCPTCRKHCL HPFRPEEREE 180 HMKSCENRQK HLEALKRSQE IECSVCLERV LSKPTAAERK FGVLSECDHP FCISCIRNWR 240 SSNPTLGMDV NSTLRACPIC RKLSYFVIPS VIWYSTSEEK HEIIDSYKAK LKSIDCKHFD 300 FGEGNCPFGT SCFYKHAYRD GRLEEVVLRH LGAADGDTVI AKEIRLADFL ANMHLR

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MARVLCKFFA HGACLKGEHC EFSHDWKVPS NNICTFYQKG ACVYGSRCRY DHVKASRLPS  60
STPSSSVTER QPVVLDSVIF ANTIMTSNGV GTAADVSPSG GAYLLPSQPA WIQESEYQDF  120
SGEDDIGQSR ITSPSELPIC SFAAAGSCPR GEKCPHIHGD LCPTCRKHCL HPFRPEEREE  180
HMKSCENRQK HLEALKRSQE IECSVCLERV LSKPTAAERK FGVLSECDHP FCISCIRNWR  240
SSNPTLGMDV NSTLRACPIC RKLSYFVIPS VIWYSTSEEK HEIIDSYKAK LKSIDCKHFD  300
FGEGNCPFGT SCFYKHAYRD GRLEEVVLRH LGAADGDTVI AKEIRLADFL ANMHLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-159	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW15441