PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW14009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 229aa MW: 26381.1 Da PI: 9.1437 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.6 | 2.9e-17 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i ++s+r+ t+ kR+ng+ KK +E+S+LC++e++ ii++++ OIW14009 11 IADDSKRKATYKKRKNGLVKKTNEISILCGIEACAIIYGPNE 52 8899***********************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MTRNKVKLTY IADDSKRKAT YKKRKNGLVK KTNEISILCG IEACAIIYGP NETQPEVWPS 60 HPEVQRVINK FKTMPEHEQN KYMLNQESFL TKSIMKTRDQ LKKLRNENKK IEMELFMFQC 120 LSTGSTNNMV DSNDLLCVIN QTLKEIEWKK SRVQPQQGTV EASNGAKPLN EENTFVDAHN 180 HIQGMMQTNM GPMQMQDWSF DSANGGGNVM LPFRDYNISN GFWHGPSFH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-43 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW14009 |