PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIW12913

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 364aa MW: 40133.7 Da PI: 6.6929

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW12913	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.4	3.2e-15	281	305	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+yGd C+FaHg OIW12913 281 KTELCNKWQETGTCPYGDHCQFAHG 305 9***********************8 PP
2	zf-CCCH	18.3	4.2e-06	318	342	1	25
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H OIW12913 318 YKTEVCRMVLA-GvVCPYGHRCHFRH 342 9********.66********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MHDKDAFSPS SNDGYGANAV ASSQMQSNSA AAFASFYSAL LDENIPPSIS ASCSNLGGSA 60 VSLYPYSSDD SGTQSHGYDS CFIQKHQDMV NRHSMCLTRL VETSKEVETL RQENAQLRAA 120 VEELQKNLNL VIQASLENQF GGETQTTPFD VVHGFRGFHV GDGKENCADW NININNSNHN 180 SKNEKVDISE ESPTSVIENN GDEVKRFALP KSISVRSNDY LKTQSAAVVP TNTTAMRAKG 240 ATRPRASTIT ASDAVQKVYV RGGQKEEEPL EMVVYNQGML KTELCNKWQE TGTCPYGDHC 300 QFAHGIGELR PVIRHPRYKT EVCRMVLAGV VCPYGHRCHF RHALTEQEKA LSQPNPRALI 360 KLDR

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MHDKDAFSPS SNDGYGANAV ASSQMQSNSA AAFASFYSAL LDENIPPSIS ASCSNLGGSA  60
VSLYPYSSDD SGTQSHGYDS CFIQKHQDMV NRHSMCLTRL VETSKEVETL RQENAQLRAA  120
VEELQKNLNL VIQASLENQF GGETQTTPFD VVHGFRGFHV GDGKENCADW NININNSNHN  180
SKNEKVDISE ESPTSVIENN GDEVKRFALP KSISVRSNDY LKTQSAAVVP TNTTAMRAKG  240
ATRPRASTIT ASDAVQKVYV RGGQKEEEPL EMVVYNQGML KTELCNKWQE TGTCPYGDHC  300
QFAHGIGELR PVIRHPRYKT EVCRMVLAGV VCPYGHRCHF RHALTEQEKA LSQPNPRALI  360
KLDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	1e-82	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW12913