PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIW07995

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 468aa MW: 50515.1 Da PI: 7.5336

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW07995	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.3e-09	109	129	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++ + G C++G+rCkF H+ OIW07995 109 ICNYWVQ-GNCSFGERCKFLHS 129 8****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MDLDGGNKRV FNRLGGPAGD PRSQKVCYHW QAGKCNRHPC AFLHSELPPH NSNGGPSKRP 60 YGSAENLSFN GPPRRTSNFN TWGRGGGGRG GGGGRGGGRG GEVKKADKIC NYWVQGNCSF 120 GERCKFLHSW SLGDGFSLLT QLEGHKNVVS GIAFPSGSNK LYTGSTDETV RVWDCQSGQC 180 TAVINLGGEV GCMISEGPWV FVGIPNFVKV WNTENLIELS LSGPVGQVYA LVVINDMLFA 240 GTQDGSILIW KFNLTTNGFE PAASLKGHTH GVVSLVVGAN RLYSGSMDNT IRVWNLETLQ 300 CLQTLTEHTS VVMSVLCWDQ FLLSCSLDKT VKVWFATESG NLEVTYTHNE EHGYDTLVGE 360 RGGLLSGGQR QRIAIARALL KNAPILILDE ATSALDATSE RLVQDALNHL MKGRTTLVIA 420 HRLSTVQNAH QIALVSDGGI AEIGTHLELV AKEGQYASLV STQRLAFE

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MDLDGGNKRV FNRLGGPAGD PRSQKVCYHW QAGKCNRHPC AFLHSELPPH NSNGGPSKRP  60
YGSAENLSFN GPPRRTSNFN TWGRGGGGRG GGGGRGGGRG GEVKKADKIC NYWVQGNCSF  120
GERCKFLHSW SLGDGFSLLT QLEGHKNVVS GIAFPSGSNK LYTGSTDETV RVWDCQSGQC  180
TAVINLGGEV GCMISEGPWV FVGIPNFVKV WNTENLIELS LSGPVGQVYA LVVINDMLFA  240
GTQDGSILIW KFNLTTNGFE PAASLKGHTH GVVSLVVGAN RLYSGSMDNT IRVWNLETLQ  300
CLQTLTEHTS VVMSVLCWDQ FLLSCSLDKT VKVWFATESG NLEVTYTHNE EHGYDTLVGE  360
RGGLLSGGQR QRIAIARALL KNAPILILDE ATSALDATSE RLVQDALNHL MKGRTTLVIA  420
HRLSTVQNAH QIALVSDGGI AEIGTHLELV AKEGQYASLV STQRLAFE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	95	RGGGGRGGGGGR
2	85	94	GGGGRGGGGG
3	86	95	GGGGRGGGGG
4	87	96	GGGGRGGGGG
5	89	100	RGGGGRGGGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25440.1	1e-150	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW07995