PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW04540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27320.1 Da PI: 9.4164 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.9 | 2.6e-18 | 22 | 68 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 ++e + +r+vtf+kR+ g++ K ELS+LC+ae avi+ s++gkly+ OIW04540 22 KVEPNNKRHVTFTKRKLGLFNKVTELSILCQAETAVILSSQQGKLYT 68 5677889***************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MSSSSNDTIT TKCNKRKIEI KKVEPNNKRH VTFTKRKLGL FNKVTELSIL CQAETAVILS 60 SQQGKLYTCG YPDPDAVIRR FLTDGSPVQR GRAGKKQQQE LVETLRLEYE DTHKMLQEEK 120 KKLDEIKEAH NGRLDFPAWW NKDIEKMGVE DLENFMASLE ILKLNLVATA EGMKLNSRTP 180 MIPTPIDPRA MFSNTTATDP RAMFSNFNGC FSGNHQAWNS MNGSSSSSRN PLVTKFDLGH 240 Y |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-22 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW04540 |