PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIW04107

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 662aa MW: 73150.4 Da PI: 7.3274

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW04107	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.3e-08	254	274	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd+C +aHg OIW04107 254 PCPEFRK-GTCQKGDSCEYAHG 274 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MCSGSKSNLS TSNQVMESEF QKILLEFSAF DDVEAFKREV EEKGLDVNEA VFWYGRRIGS 60 KKMGYEKRTP LMIASLFGST RVVKYIIEIG NVDVNKACGS DGVTALHCAV AGGSESSLEI 120 VKLLLDAGAD ADCLDAIGNK PVTLIAPAFN PLSNSRRKAL EFFLRGGQGD QQLYEIEQLP 180 EKKEGSDKKE YPVDISLPDI NNGVYGTDDF RMYSFKVKPC SRAYSHDWTE CPFVHPGENA 240 RRRDPRKYPY SCVPCPEFRK GTCQKGDSCE YAHGVFESWL HPAQYRTRLC KDETGCNRKV 300 CFFAHKPEEL RPVYASTGSA MPSPKSYAAS ALDMTSMSPL SLSSSLPMST VSTPPMSPLA 360 ASSSPKSGNM WQNKINFTPP SLQLPGSRLK AALSARDLNL EMELLGLESP SHARQQQQQQ 420 QLKEEIARIS SPSFRSRMGD LNPTNLDELL ASADASVLSQ LHGLSVQPST PTQMQTQNAL 480 QMHQNINHLR ASYPSNNMPS SPVYKSSPYG FDSSAAVAAA MMNSRSAAFA KRSQSFIDRG 540 AATHHIGLSS PSNPSCKVSS TLSDWGSPTG KVDWGLNGDE LNKLRKSASF GYRNNGASSP 600 MAQPEHVEPD VSWVHSMVRE ERTERFGVEK PQQQQQHYDL SKETLPPWLE QLYIEQQKQM 660 VA

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MCSGSKSNLS TSNQVMESEF QKILLEFSAF DDVEAFKREV EEKGLDVNEA VFWYGRRIGS  60
KKMGYEKRTP LMIASLFGST RVVKYIIEIG NVDVNKACGS DGVTALHCAV AGGSESSLEI  120
VKLLLDAGAD ADCLDAIGNK PVTLIAPAFN PLSNSRRKAL EFFLRGGQGD QQLYEIEQLP  180
EKKEGSDKKE YPVDISLPDI NNGVYGTDDF RMYSFKVKPC SRAYSHDWTE CPFVHPGENA  240
RRRDPRKYPY SCVPCPEFRK GTCQKGDSCE YAHGVFESWL HPAQYRTRLC KDETGCNRKV  300
CFFAHKPEEL RPVYASTGSA MPSPKSYAAS ALDMTSMSPL SLSSSLPMST VSTPPMSPLA  360
ASSSPKSGNM WQNKINFTPP SLQLPGSRLK AALSARDLNL EMELLGLESP SHARQQQQQQ  420
QLKEEIARIS SPSFRSRMGD LNPTNLDELL ASADASVLSQ LHGLSVQPST PTQMQTQNAL  480
QMHQNINHLR ASYPSNNMPS SPVYKSSPYG FDSSAAVAAA MMNSRSAAFA KRSQSFIDRG  540
AATHHIGLSS PSNPSCKVSS TLSDWGSPTG KVDWGLNGDE LNKLRKSASF GYRNNGASSP  600
MAQPEHVEPD VSWVHSMVRE ERTERFGVEK PQQQQQHYDL SKETLPPWLE QLYIEQQKQM  660
VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW04107