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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIW02795 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 281aa MW: 31521.1 Da PI: 4.6433 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 53.4 | 5.9e-17 | 13 | 88 | 23 | 98 |
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
arikki++adedv +i+ +P l+ska elf+ +l +++ + + rt++ ++++v+ ++fdfl div +
OIW02795 13 QARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDQTYDITVRKGARTMNAIHLKQCVQTFNVFDFLKDIVSK 88
59***********************************************************************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 281 aa Download sequence |
MVIMYSDRID YRQARIKKIM QADEDVGKIA MAVPLLVSKA LELFLQDLCD QTYDITVRKG 60 ARTMNAIHLK QCVQTFNVFD FLKDIVSKVP DLGGSVASGD DSATTKRRKV AEDGDNDSDE 120 EQKRNKMPEP GHTSGRGRGR GRGRGRGRGS RTVDQEMASH IKFEDDSNIL NQNDKHTGSN 180 ESLENVPEPE EVKHSFPASK PAETCIRNFD LNMEPVESMD SLDVPTPIPS SSPGKSVSEE 240 KHEEYPGWSL SDMEKMAIDP IQLANLNRNI DEDKEDYDEE M |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 136 | 145 | RGRGRGRGRG |
| 2 | 136 | 146 | RGRGRGRGRGR |
| 3 | 138 | 147 | RGRGRGRGRG |
| 4 | 138 | 148 | RGRGRGRGRGR |
| 5 | 140 | 149 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G19490.1 | 5e-50 | NF-YC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIW02795 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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