PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIV95504

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 615aa MW: 67537.9 Da PI: 6.3534

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV95504	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.6e-07	262	282	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C+ Gd C +aHg OIV95504 262 PCPEFKK-GLCSKGDACEYAHG 282 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MFTASNGLHY RISALLEFSA ANDVKGLKNA IEEEGHDVAE VGLWYGRRVG SKDFGYEERT 60 SLMVAAMFGS KDVLSYILGT GGVDVNRTCG SDGATALHCA VAGGSANSPE IIKFLLDASA 120 DVNAVDANGN RPSDLIGFVF NSIFNPRRRI LEAILEGKDG GFDEACLTFD KADGEMVRLK 180 QHYIDVHRVP REGTEKKVYS VDVSLPDIKD GIYSTDEFRM YTFKVKPCSR AYSHDWTECP 240 FVHPGENARR RDPLKYHYSC VPCPEFKKGL CSKGDACEYA HGIFECWLHP AQYRTRLCKD 300 EGGCTRRVCF FAHKLEELRP LYASTGSAMP SPKTYSAAAS SLEIGSLSPF IPSSPPASVT 360 PLSPSGAASP LGRTAMWQTT QFHVAVPTLQ LAGSRLKTAS NARDVGLGIE VPGLENRRLM 420 QNMLFSDEMA ELSSPSKWKN TKRNSPSFPD SFDADAGELN RNQQLRGYSS NVIGSPLALT 480 SRNAAFSKRS QSFIERSVVS HNSEPSIFSG WGSPDGKLDW GIRGEELNKL RKSASFGFRG 540 NSSPLIMAAT TSPPNVDEPD VSWVHSLVKD APPMETGQYG IEEELHSPQR YLNNGTDVVP 600 AWLEQLYMEQ EQMVA

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MFTASNGLHY RISALLEFSA ANDVKGLKNA IEEEGHDVAE VGLWYGRRVG SKDFGYEERT  60
SLMVAAMFGS KDVLSYILGT GGVDVNRTCG SDGATALHCA VAGGSANSPE IIKFLLDASA  120
DVNAVDANGN RPSDLIGFVF NSIFNPRRRI LEAILEGKDG GFDEACLTFD KADGEMVRLK  180
QHYIDVHRVP REGTEKKVYS VDVSLPDIKD GIYSTDEFRM YTFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPLKYHYSC VPCPEFKKGL CSKGDACEYA HGIFECWLHP AQYRTRLCKD  300
EGGCTRRVCF FAHKLEELRP LYASTGSAMP SPKTYSAAAS SLEIGSLSPF IPSSPPASVT  360
PLSPSGAASP LGRTAMWQTT QFHVAVPTLQ LAGSRLKTAS NARDVGLGIE VPGLENRRLM  420
QNMLFSDEMA ELSSPSKWKN TKRNSPSFPD SFDADAGELN RNQQLRGYSS NVIGSPLALT  480
SRNAAFSKRS QSFIERSVVS HNSEPSIFSG WGSPDGKLDW GIRGEELNKL RKSASFGFRG  540
NSSPLIMAAT TSPPNVDEPD VSWVHSLVKD APPMETGQYG IEEELHSPQR YLNNGTDVVP  600
AWLEQLYMEQ EQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV95504