PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIV89490

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 977aa MW: 107787 Da PI: 8.7302

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV89490	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.6e-06	140	160	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr fa+ G C++G+ C+F H OIV89490 140 PCREFAA-GKCRRGSHCHFLHH 160 8****.***********6 PP
2	zf-CCCH	22.5	2e-07	199	220	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF H OIV89490 199 EACVNFAK-GRCRNGSSCKFVHN 220 78****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence
MSGSARKRSS KWDMSDGPEF APDSKQLHSY LEGNDKSKYG TGFSSKESFS RGRGSNKDDI 60 MNKDYRDWDE TMEWDADESY SKKFSPGFEE LKYNRRSQSP KNGRSMSVRS SRSRSPPHGF 120 RRDSGFNDVS RTTAGGSLQP CREFAAGKCR RGSHCHFLHH DNQNYEDSWE SKHREDGAPK 180 YYAPHDSRDH SHRSGRSNEA CVNFAKGRCR NGSSCKFVHN NSDGYSKGSV DESNREREND 240 RRRRDNSFDQ GGGHGPNRSG PPPCKFFANG NCRNAKSCRF SHDRQAYGSS PNRRSREDKW 300 GSNPGGDHQT LDRRELIDSV SSTGRLRDDR WGSDGNMVDM DNPKRNDTVA VSDTSKLVED 360 KCGNIDASDP GFTSWPRKDG WGHALYKNRE HSEPTFSSGK ETGHWMAENA GANKHVPQPT 420 GTGNWSGDEM SPDWNYRVRS SSHIQEEHGQ NKHGITQGGT YLATEHEGTQ VIPGQALNQN 480 AQNINPLHSS SGHGVGQSQV DVPILPSREV VESMHNQQVT AGLPEQGFNQ NSQNPNLNPF 540 HSSSSHAVGQ SQVAVPGPPS RGVDKSMGNQ QVSTDVPTGQ GFNQNPQNIN PFYSSVGLAV 600 GQSQVAVPIL HSKGVIESIH KQQVSNDVLP GQVFNHNAQN INPLHSLSGH AVGQSQVAVP 660 ILPSRGIIES MHNQEVSAEK KYTVEPNIKD EGLSQVSSRN PPTKNMVSNE QLTQLSNLSA 720 SLAHILGTGQ QLPQLYAALN SNDAKDTSSL AKTEVPAIPV SNTFIKPDPV LGYRKQYDPM 780 CDSIETKKVV ASGATPAFSP SKKNAKDKAE IPSLASNSGR RNCGNSFKAA CSEEHLIQLQ 840 PGRNLEVNKE KNEVVVEDRQ NSPGDHKNTK ENGPLENMDQ KGGPDDDKKS KDTKGVRTFK 900 FALVDLVKEL LKPAWKEGQI NKEDYKAIVK KVVDKVTGTM QGTNIPQTQE KIDHYLSFSK 960 PKLSKLVQAY VERVQKA

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence

MSGSARKRSS KWDMSDGPEF APDSKQLHSY LEGNDKSKYG TGFSSKESFS RGRGSNKDDI  60
MNKDYRDWDE TMEWDADESY SKKFSPGFEE LKYNRRSQSP KNGRSMSVRS SRSRSPPHGF  120
RRDSGFNDVS RTTAGGSLQP CREFAAGKCR RGSHCHFLHH DNQNYEDSWE SKHREDGAPK  180
YYAPHDSRDH SHRSGRSNEA CVNFAKGRCR NGSSCKFVHN NSDGYSKGSV DESNREREND  240
RRRRDNSFDQ GGGHGPNRSG PPPCKFFANG NCRNAKSCRF SHDRQAYGSS PNRRSREDKW  300
GSNPGGDHQT LDRRELIDSV SSTGRLRDDR WGSDGNMVDM DNPKRNDTVA VSDTSKLVED  360
KCGNIDASDP GFTSWPRKDG WGHALYKNRE HSEPTFSSGK ETGHWMAENA GANKHVPQPT  420
GTGNWSGDEM SPDWNYRVRS SSHIQEEHGQ NKHGITQGGT YLATEHEGTQ VIPGQALNQN  480
AQNINPLHSS SGHGVGQSQV DVPILPSREV VESMHNQQVT AGLPEQGFNQ NSQNPNLNPF  540
HSSSSHAVGQ SQVAVPGPPS RGVDKSMGNQ QVSTDVPTGQ GFNQNPQNIN PFYSSVGLAV  600
GQSQVAVPIL HSKGVIESIH KQQVSNDVLP GQVFNHNAQN INPLHSLSGH AVGQSQVAVP  660
ILPSRGIIES MHNQEVSAEK KYTVEPNIKD EGLSQVSSRN PPTKNMVSNE QLTQLSNLSA  720
SLAHILGTGQ QLPQLYAALN SNDAKDTSSL AKTEVPAIPV SNTFIKPDPV LGYRKQYDPM  780
CDSIETKKVV ASGATPAFSP SKKNAKDKAE IPSLASNSGR RNCGNSFKAA CSEEHLIQLQ  840
PGRNLEVNKE KNEVVVEDRQ NSPGDHKNTK ENGPLENMDQ KGGPDDDKKS KDTKGVRTFK  900
FALVDLVKEL LKPAWKEGQI NKEDYKAIVK KVVDKVTGTM QGTNIPQTQE KIDHYLSFSK  960
PKLSKLVQAY VERVQKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	244	RERENDRRRR
2	240	245	DRRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-15	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV89490