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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT40775 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 326aa MW: 38191.7 Da PI: 9.2625 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 72.4 | 8.2e-23 | 55 | 137 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W++qe+++ i++r e+e++++++k k+lWe v++km+erg++rs++qCk+kw+nl + yk + ++ ++ ++pyfd+l+
OIT40775 55 WSNQETRDFIAIRGELEREFSSAKrsNWKNLWEMVAAKMKERGYRRSAEQCKSKWKNLVNSYKGKESSDPDN----DGQFPYFDELH 137
*********************8652266************************************99999984....3469*****98 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 326 aa Download sequence |
MFGGGDNENL GPFPQRLMFP NLPLHLLPGA SISTTTAAVA GDDEFPKRDE RVPPWSNQET 60 RDFIAIRGEL EREFSSAKRS NWKNLWEMVA AKMKERGYRR SAEQCKSKWK NLVNSYKGKE 120 SSDPDNDGQF PYFDELHALF TASTNNLNQL QFESEAGSQQ ARKRPRRTIR DQSSEEVSED 180 AEGYAYESDE VKLAKSNVAP KKKIEKVKRP RANIAEKPSR QPSLGSTNNS GRTVENIQEM 240 LKDFFQQQLR IEMQWRETME KRAREREVFE QEWRSSMEKL ERDRMMIEQA WREREEQRRM 300 REESRAEKRD ALLTRLLNKL IGENHP |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 163 | 206 | KRPRRTIRDQSSEEVSEDAEGYAYESDEVKLAKSNVAPKKKIEK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G38250.1 | 7e-34 | Trihelix family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT40775 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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