PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT40575
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 326aa    MW: 36246.3 Da    PI: 5.1419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT40575genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +v+++G+g+W++++ + g++R+ k+c++rw +yl
         OIT40575 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPTKTGLRRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.61.9e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
         OIT40575  67 RGSFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MGRPPCCEKV GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PTKTGLRRCS KSCRLRWTNY  60
LRPGIKRGSF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKMKNLE  120
EKCSGEDDLF SVENGHNLSS SNSTSRGQWE RTLQADINMA KKALHNALSL ENSTPYIKQE  180
TPATVSTYAS STENIARLLQ GWMPSSSSTN NSENSKTSSN NIAATTDSSS CDGTPSAESK  240
GGMVLMEALE SLFGLESSFE RSSSDQLSQT ASPEGSKFQV EIKKEENTNS QVPLSVMLEN  300
WLLDENTIQG KDDLTSFSFD ETADLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-101MYB family protein