PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT40538
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 373aa    MW: 42234.5 Da    PI: 6.1079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT40538genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09177222454
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               +h + +r+ R ++N+++  Lr+l+P++     +K++ a+i+  ++ YI++L
  OIT40538 177 KHFATDRQKRVHLNDKYKALRSLVPNP-----TKNDRASIVGDTIMYINEL 222
               799************************.....9***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MELQQQVNLE MQHSYNTTTN NNNSVIANSL THESSSHQGP SFDQSNWGDI SFPQFHHQLE  60
DHHFQVPLHT DMFPLHTCSI SFTNTSQFPL HTADGASTST AIYDPSLFPL NLPPNPPLIR  120
ELVHSTFGSL FNVMETEVSG DLYQDAEEGK SPFENGIFEF SADTSCMTKD RNTKEIKHFA  180
TDRQKRVHLN DKYKALRSLV PNPTKNDRAS IVGDTIMYIN ELKRTVNELK ILVDKKMCCR  240
DRIKSGPMNS ADVKIRNEVD QSSLWLQRKS NNTEVDVRIV DDEVTVKLVQ QKRTNCLLFV  300
SKVLDDLQLD LHHVAGGLIG DYYSFLFNSK ICEGSAVYAI AIANKLIEIV DTEISPCNTT  360
STPLQDRQRL LCK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.12e-60bHLH family protein