PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40443

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 412aa MW: 47086.5 Da PI: 7.3323

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40443	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	148.3	5.1e-46	122	276	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssa........secea 75 +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ ai el ++ s + s OIT40443 122 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAISELSENipqkdysdgnkiinnntssS---EdqkseslmS---- 215 79************************************************************98887777766665432220...1111112222.... PP TCP 76 esssssas.........nsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 + ns+++ +++ + + +++ s+ ++n++k esr+karararert+ekm+ik OIT40443 216 -------EcevlsrweeNSNNEGKERGKDINMNDRLSEMVQNNPHKrESRNKARARARERTKEKMMIK 276 .......1333333332333336666666777777777778999999****************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MFPSGNSQEP FNPYTSKALF EKSFTYNHHQ NPSSSSRQED LASFLNFPSP FLDDHNNELP 60 LNQILSHQHH HDQEAGDHHH VKESNFTHNI SCETSKEEMS IEAAKTSSKK RNLSATPPRR 120 RTGKKDRHSK ICTAQGVRDR RVRLSLHIAR KFFDLQDMLG FDKASKTIEW LFSKSNNAIS 180 ELSENIPQKD YSDGNKIINN NTSSSEDQKS ESLMSECEVL SRWEENSNNE GKERGKDINM 240 NDRLSEMVQN NPHKRESRNK ARARARERTK EKMMIKGLDK KCNKQWYETN PNSSTNILDH 300 LGSSSNSGFL DQEYSNNNSY NNTSVNQEKG SPFEANSQSL EHQFISNYYA NSSAAVGGLD 360 SGNCFLGFLG NWEYAPMAYA GNPSSIYLAN SSYQFQPLDQ EKHLSCRHHR QE

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MFPSGNSQEP FNPYTSKALF EKSFTYNHHQ NPSSSSRQED LASFLNFPSP FLDDHNNELP  60
LNQILSHQHH HDQEAGDHHH VKESNFTHNI SCETSKEEMS IEAAKTSSKK RNLSATPPRR  120
RTGKKDRHSK ICTAQGVRDR RVRLSLHIAR KFFDLQDMLG FDKASKTIEW LFSKSNNAIS  180
ELSENIPQKD YSDGNKIINN NTSSSEDQKS ESLMSECEVL SRWEENSNNE GKERGKDINM  240
NDRLSEMVQN NPHKRESRNK ARARARERTK EKMMIKGLDK KCNKQWYETN PNSSTNILDH  300
LGSSSNSGFL DQEYSNNNSY NNTSVNQEKG SPFEANSQSL EHQFISNYYA NSSAAVGGLD  360
SGNCFLGFLG NWEYAPMAYA GNPSSIYLAN SSYQFQPLDQ EKHLSCRHHR QE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-30	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT40443