PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40414

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 329aa MW: 36202.3 Da PI: 5.7639

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40414	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.3	3.7e-27	36	136	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e + ++es+s +++ ++l+ OIT40414 36 RWTRQEILVLIQGKRVAESRVRRGRtaglelgsgsgsgsgQVEPKWASVSSYCKKHGVNRGPVQCRKRWSNLAGDFKKIKEWECGIKEESESFWVMRNDLR 136 8********************98888899999999999*******************************************99999999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MALEPLTLAF DGDSNGGRQQ SVNGADDGNR APRLPRWTRQ EILVLIQGKR VAESRVRRGR 60 TAGLELGSGS GSGSGQVEPK WASVSSYCKK HGVNRGPVQC RKRWSNLAGD FKKIKEWECG 120 IKEESESFWV MRNDLRRERK LPGFFDKEVY EILDRGSGGE EMEAGLALAL APAAAVNEPE 180 ALFDSGRSAA ADEGLFSDFE QSEAGDKDKH MPIPAPTPIS EQQYQPLPME CNAQGINHQK 240 EPTSNPDGGS AQEGKKRKRG VTDTDEEADN LQHQLAKALE RNGNLLSSQL EAQNAHYQLD 300 REQRKDHVNS LIAVLDKLAD AMGRIADKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	260	GKKRKRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-106	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT40414