PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40303

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 349aa MW: 37681.6 Da PI: 7.326

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40303	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00083	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H OIT40303 130 YECKTCNRTFPSFQALGGHRASH 152 99**********99999998887 PP
2	zf-C2H2	13.4	0.00023	242	264	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H OIT40303 242 HECSICGSEFSSGQALGGHMRKH 264 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MEVSQDFPDR SYAFKGKRSK RSRPSSPFDI AGTMVTSSSS VAGGSDDGGG GGDVYYSSAI 60 IQYSPTTSTT QISTSSTSEE DEDMANCLIL LAQSGRKVQV VTEVKKEKIS SRKFTEMVNT 120 TTGKAGFFVY ECKTCNRTFP SFQALGGHRA SHRRPKTIVE EKKSVTITAT ATATAMASAS 180 TAMATASAGA DSLVENHDDN HVKNDQEEGR LNKISASLSI QIVNNNKGIN SHGNSYSKPK 240 IHECSICGSE FSSGQALGGH MRKHKPPTTT TATNSTKVST NTHIETINNF SESSHDDVAT 300 NNYKEEEKST RNFLSLDLNL PAPPEDDRRE TKFEQSLVFS AAPLVGCHY

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MEVSQDFPDR SYAFKGKRSK RSRPSSPFDI AGTMVTSSSS VAGGSDDGGG GGDVYYSSAI  60
IQYSPTTSTT QISTSSTSEE DEDMANCLIL LAQSGRKVQV VTEVKKEKIS SRKFTEMVNT  120
TTGKAGFFVY ECKTCNRTFP SFQALGGHRA SHRRPKTIVE EKKSVTITAT ATATAMASAS  180
TAMATASAGA DSLVENHDDN HVKNDQEEGR LNKISASLSI QIVNNNKGIN SHGNSYSKPK  240
IHECSICGSE FSSGQALGGH MRKHKPPTTT TATNSTKVST NTHIETINNF SESSHDDVAT  300
NNYKEEEKST RNFLSLDLNL PAPPEDDRRE TKFEQSLVFS AAPLVGCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	5e-45	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT40303